Strain
Pgo_410721
(Region: Asia / China / Guangdong; Strain: BetaCoV/pangolin/Guandong/1/2019; Date: 2019)
Gene
ORF3a protein
Description
Annoated by sequence mapping,
ORF3a protein
Location
GenBank Accession
Sequence
CDS
ATGGATTTGTTTATGAGAATTTTCACTCTTGGAACTGTAACTTTGAAACAAGGTGAAATCAAGGATGCTACTCCTTCAGATTCTGTTCGCGCTACTGCAACGATACCGATACAAGCCACACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTTCAAAGCGCTTCCAAAATAATAACACTCAAAAAGAGGTGGCATTTAGCCCTCTCTAAGGGTGTTCACTTTGTTTGCAACTTGCTGCTGCTGTTTGTAACAGTTTATTCACATCTTTTGCTTGTTGCTGCTGGCCTTGAAGCCCCATTTCTTTATCTTTATGCTTTAGTTTATTTCTTGCAAAGTATAAACTTTGTGAGAATAATAATGAGGCTTTGGTTGTGCTGGAAATGCCGTTCCAAAAATCCTTTACTTTATGATGCTAACTACTTCCTGTGTTGGCATACTAATTGTTACGACTATTGTATTCCATACAATAGTGTAACTTCTTCAATTGTCATTACCTCCGGTGATGGCACAACAAATCCCATTACAGAACATGACTACCAAATTGGTGGTTATTTTGAGAAATGGGAATCTGGAGTAAAAGACTGTGTTGTATTACACAGCTACTTCACTTCAGATTACTACCAGCTGTACTCAACTCAATTGAGCACAGACACTGGTGTTGAACATGTAACTTTCTTCATCTACAATAAAATCGTAGATGAGCCCGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTTAATCCAGCAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTG
Protein
MDLFMRIFTLGTVTLKQGEIKDATPSDSVRATATIPIQATLPFGWLIVGVALLAVFQSASKIITLKKRWHLALSKGVHFVCNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTNPITEHDYQIGGYFEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPAMEPIYDEPTTTTSVPL
Summary
Uniprot
EMBL
Proteomes
Pfam
PF11289
APA3_viroporin
Interpro
IPR024407
SARS_coronavirus_Orf3/3a
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
275
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
66.23596
Exp number, first 60 AAs:
22.08208
Total prob of N-in:
0.00433
POSSIBLE N-term signal
sequence
outside
1 - 33
TMhelix
34 - 56
inside
57 - 76
TMhelix
77 - 99
outside
100 - 102
TMhelix
103 - 125
inside
126 - 275
