CoVDB Coronavirus Database (v2) Go to the lastest version >>
Found: 10 items
Strain: Human_SARS_AY772062 Gene: AAX16192.1 S spike glycoprotein S
Pfam:    Spike_rec_bind Corona_S2 Spike_NTD
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6ACK 2407 0.0 99.83 1196 95.30% 99.42% 1 - 1196 1 - 1196 Analyze View alignments
6ACJ 2407 0.0 99.83 1196 95.30% 99.42% 1 - 1196 1 - 1196 Analyze View alignments
6ACG 2407 0.0 99.83 1196 95.30% 99.42% 1 - 1196 1 - 1196 Analyze View alignments
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Strain: Human_SARS_AY772062 Gene: AAX16193.1 ORF1 orf1ab polyprotein
Pfam:    nsp8 nsp7 DUF3655 NAR Macro NSP11 SUD-M Nsp1 Peptidase_C30 Viral_protease NSP16 nsp9 NSP10 Nsp3_PL2pro Corona_RPol_N Corona_NSP4_C
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6NUS 1964 0.0 99.79 933 13.19% 97.70% 4368 - 5300 1 - 933 Analyze View alignments
6NUR 1964 0.0 99.79 933 13.19% 97.70% 4368 - 5300 1 - 933 Analyze View alignments
6JYT 1258 0.0 100.00 601 8.50% 99.67% 5302 - 5902 3 - 603 Analyze View alignments
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Strain: Human_SARS_AY772062 Gene: AAX16200.1 N nucleocapsid protein N
Pfam:    Corona_nucleoca
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
1SSK 277 4e-93 99.24 132 31.28% 83.54% 44 - 175 21 - 152 Analyze View alignments
2OG3 266 3e-89 99.21 127 30.09% 92.03% 48 - 174 12 - 138 Analyze View alignments
2OFZ 266 3e-89 99.21 127 30.09% 92.03% 48 - 174 12 - 138 Analyze View alignments
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Strain: Human_SARS_AY772062 Gene: AAX16197.1 M membrane protein M
Pfam:    Corona_M
Strain: Human_SARS_AY772062 Gene: AAX16196.1 E envelope protein E
Pfam:    NS3_envE
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
5X29 62.0 1e-14 91.94 62 81.58% 76.54% 4 - 65 20 - 81 Analyze View alignments
2MM4 59.7 8e-14 94.83 58 76.32% 100.00% 8 - 65 1 - 58 Analyze View alignments
Strain: Human_SARS_AY772062 Gene: AAX16195.1 putative uncharacterized protein 2
Pfam:    SARS_3b
Strain: Human_SARS_AY772062 Gene: AAX16198.1 putative uncharacterized protein 3
Pfam:    Sars6
Strain: Human_SARS_AY772062 Gene: AAX16199.1 putative uncharacterized protein 4
Pfam:    SARS_X4
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
1XAK 73.9 7e-19 77.27 44 43.56% 53.01% 14 - 57 1 - 43 Analyze View alignments
1YO4 70.5 2e-17 78.57 42 41.58% 48.28% 16 - 57 3 - 43 Analyze View alignments
Strain: Human_SARS_AY772062 Gene: AAX16191.1 orf1a polyprotein
Pfam:    nsp7 nsp8 SUD-M Viral_protease NSP10 NAR DUF3655 Macro Nsp1 Peptidase_C30 nsp9 Nsp3_PL2pro Corona_NSP4_C
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
5E6J 664 0.0 98.75 319 7.28% 98.15% 1541 - 1859 2 - 320 Analyze View alignments
4M0W 663 0.0 99.37 318 7.26% 97.25% 1541 - 1858 2 - 319 Analyze View alignments
3E9S 660 0.0 99.68 315 7.19% 99.06% 1541 - 1855 4 - 318 Analyze View alignments
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Strain: Human_SARS_AY772062 Gene: AAX16194.1 putative uncharacterized protein 1
Pfam:    APA3_viroporin
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