CoVDB Coronavirus Database (v2) Go to the lastest version >>
Found: 10 items
Strain Gene Type Sub Loc Uniprot Sublocation Topology
Pgo_410544 QHD43415.1 ORF1 Capsid Host membrane
outside 1 - 1029
TMhelix 1030 - 1052
inside 1053 - 1388
TMhelix 1389 - 1408
outside 1409 - 1417
TMhelix 1418 - 1440
inside 1441 - 1452
TMhelix 1453 - 1475
outside 1476 - 4164
Pgo_410544 QHD43416.1 S Host nucleus > host nucleolus. Host cytoplasm. Secreted. Host cell membrane
Accumulates in the endoplasmic reticulum-Golgi intermediate compartment, where it participates in virus particle assembly. Some S oligomers are transported to the host plasma membrane, where they may mediate cell-cell fusion.
referred by 1 publications
outside 1 - 670
Pgo_410544 QHD43417.1 Host nucleus > host nucleolus. Host cytoplasm. Secreted.

outside 1 - 33
TMhelix 34 - 56
inside 57 - 67
TMhelix 68 - 90
outside 91 - 93
TMhelix 94 - 116
inside 117 - 275
Pgo_410544 QHD43418.1 E Host nucleus. Host cytoplasm. Host Golgi apparatus membrane
The cytoplasmic tail functions as a Golgi complex-targeting signal.
referred by 1 publications
outside 1 - 14
TMhelix 15 - 37
inside 38 - 72
Pgo_410544 QHD43419.1 M Host nucleus. Host cytoplasm.

outside 1 - 69
Pgo_410544 QHD43420.1 Host nucleus. Host cytoplasm.

outside 1 - 23
Pgo_410544 QHD43421.1 Host nucleus > host nucleolus. Host cytoplasm. Secreted.

outside 1 - 55
Pgo_410544 QHD43422.1 Host nucleus. Host cytoplasm.

outside 1 - 55
Pgo_410544 QHD43423.2 N Host nucleus > host nucleolus. Host cytoplasm. Secreted. Host Golgi apparatus
Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding.
referred by 1 publications
outside 1 - 419
Pgo_410544 QHI42199.1 Single-Pass Membrane

outside 1 - 38
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