Strain
Murine_AB551247
(Region: Australia:Melbourne; Strain: Murine hepatitis virus RNA, complete genome, strain: MHV-MI.; Date: 1994)
Gene
non-structural protein 2a
Description
Annotated in NCBI,
non-structural protein 2a
Location
GenBank Accession
Full name
Non-structural protein 2a
Alternative Name
ns2
Sequence
CDS
ATGGCCTTTGCTGACAAGCCCAATCATTTTATAAACTTTTCATTGGCCCAATTCAGTGGCTTCATGGGTAAGTATTTAAAGCTTCAGTCTCAACTTGTGGAAATGGGTTTGGACTGCAAATTACAGAAAGCACCACATGTTAGTATTACAATGCTTGATATTAAAGCAGAACAATGCAAACAGGTGGAATTTGCAATACAAGAAATACTAGATGATCTGGCAGCATATGAGGGAGACATTGTCTTTGACAACCCCCACATGCTTGGCAGATGTCTTGTTCTTGATGTTAAAGGATTTGAAGAGTTGCATGAAGATGTTGTTGAAATTCTCCGCAGAAGGGGCTGCACAGCAGACCAATCCAGACAATGGATTCCGCACTGCACTGTGGCTCAATTTGAGGAAGAAAAGGAAACAAAAGGATTGCAATTCTATCATAAATTGCCCTTCTACCCTAAGCATAACAACGTGTTAACAGATGCTAGGCTTGAGCTTGTGAAGATAGGTTCTTCCAAAATAGATGGGTTTTATTGTAGTGAATTAAGTATTTGGTGTGGTGAGAGGCTTTGTTACAAGCCCCCAACAACCAAATTCAGTGATATCTTTGGCTATTGCTGCATAGAGAAAATACGTGGTGATTTAGAAATTGGAGACCTACCGCAGGATGATGAAGAGGCGTGGGCCGAGCTAAGTTACCACTACCAAAGAAACACCTACTTCTTCAGATATGTGCACGATAATAGTATTTATTTTCGTGCCGTATGTAGAATGAAGGGGTGTGTGTGCTAA
Protein
MAFADKPNHFINFSLAQFSGFMGKYLKLQSQLVEMGLDCKLQKAPHVSITMLDIKAEQCKQVEFAIQEILDDLAAYEGDIVFDNPHMLGRCLVLDVKGFEELHEDVVEILRRRGCTADQSRQWIPHCTVAQFEEEKETKGLQFYHKLPFYPKHNNVLTDARLELVKIGSSKIDGFYCSELSIWCGERLCYKPPTTKFSDIFGYCCIEKIRGDLEIGDLPQDDEEAWAELSYHYQRNTYFFRYVHDNSIYFRAVCRMKGCVC
Summary
Similarity
Belongs to the coronaviruses ns2a protein family.
Uniprot
Pubmed
EMBL
Pfam
PF05213
Corona_NS2A
ProteinModelPortal
PDB
4Z5V
E-value=1e-136 Score= 383 Identity=90.55%
Cov(Q)=77.01% Cov(P)=96.63%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
261
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02731
Exp number, first 60 AAs:
0.02696
Total prob of N-in:
0.03017
outside
1 - 261
