CoVDB Coronavirus Database (v3)   

Gene Clusters

  Distribution in Strains
Cluster0
Snake_NC_035465(YP_009408170.1), Snake_NC_024709(YP_009052475.1), Snake_MG752895(AUS29609.1), Snake_MG752895(AUS29610.1),
Cluster1
Snake_NC_035465(YP_009408168.1), Snake_NC_035465(YP_009408169.1),
Cluster2
Turtle_MF685025(AXP11707.1), Turtle_MF685025(AXP11706.1),
Cluster3
Avian_NC_025217(YP_009072438.1), Avian_KF636752(AIL94214.1),
Cluster4
Bat_DQ339101(ABC70717.1), Cow_AF220295(AAL40397.1), Cow_KU886219(ANJ04971.1), Cow_EF424618(ABP38268.1), Cow_EF424617(ABP38261.1), Cow_EF424620(ABP38287.1), Cow_EF424616(ABP38242.1), Cow_EF424615(ABP38234.1), Cow_EF424619(ABP38280.1), Human_HKU1_MK167038(AZS52616.1), Human_HKU1_KY674941(ARB07596.1), Human_HKU1_KY674942(ARB07605.1), Human_HKU1_KY674943(ARB07614.1), Human_HKU1_NC_006577(YP_173236.1), Human_HKU1_DQ415906(ABD75583.1), Human_HKU1_DQ415905(ABD75575.1), Human_HKU1_DQ415904(ABD75567.1), Human_HKU1_DQ415903(ABD75559.1), Human_HKU1_DQ415902(ABD75551.1), Human_HKU1_DQ415901(ABD75543.1), Human_HKU1_DQ415900(ABD75535.1), Human_HKU1_DQ415899(ABD75527.1), Human_HKU1_DQ415898(ABD75519.1), Human_HKU1_DQ415897(ABD75511.1), Human_HKU1_DQ415896(ABD75503.1), Human_HKU1_DQ415914(ABD75647.1), Human_HKU1_DQ415913(ABD75639.1), Human_HKU1_DQ415912(ABD75631.1), Human_HKU1_DQ415911(ABD75623.1), Human_HKU1_DQ415910(ABD75615.1), Human_HKU1_DQ415909(ABD75607.1), Human_HKU1_DQ415908(ABD75599.1), Human_HKU1_DQ415907(ABD75591.1), Human_HKU1_KF686340(AGW27834.1), Human_HKU1_KF430201(AGT17767.1), Human_HKU1_KF686344(AGW27870.1), Human_HKU1_KF686343(AGW27861.1), Human_HKU1_KF686346(AGW27879.1), Human_HKU1_KF686342(AGW27852.1), Human_HKU1_KF686341(AGW27843.1), Human_HKU1_MH940245(AYN64559.1), Human_HKU1_HM034837(ADN03337.1), Human_HKU1_KT779556(AMN88692.1), Human_HKU1_KT779555(AMN88684.1), Human_HKU1_AY884001(AAX76519.1), Human_HKU1_KY674921(ARB07436.1), Human_HKU1_AY597011(AAT98578.1), Murine_MH687968(AYR18596.1), Deer_FJ425187(ACJ66981.1), Waterbuck_FJ425184(ACJ66948.1), Waterbuck_FJ425185(ACJ66955.1), Waterbuck_FJ425186(ACJ66970.1), Deer_FJ425188(ACJ66995.1), Deer_FJ425190(ACJ67009.1), Deer_FJ425189(ACJ66997.1), Antelope_EF424621(ABP38299.1), Giraffe_EF424622(ABP38314.1), Giraffe_EF424623(ABP38327.1), Giraffe_EF424624(ABP38333.1), Alpaca_DQ915164(ABI93998.1), Human_HKU1_KF430201(AGT17766.1), Human_HKU1_KF686340(AGW27833.1), Human_HKU1_KF686341(AGW27842.1), Human_HKU1_KF686342(AGW27851.1), Human_HKU1_KF686343(AGW27860.1), Human_HKU1_KF686344(AGW27869.1), Human_HKU1_KF686346(AGW27878.1), Human_HKU1_KY674941(ARB07597.1), Human_HKU1_KY674942(ARB07606.1), Human_HKU1_KY674943(ARB07615.1),
Cluster5
Bat_MG021452(AVV62535.1), Bat_KX442564(ASL68940.1), Bat_KX442565(ASL68951.1), Bat_LC469308(BBJ36006.1), Human_MERS_KJ556336(AHN10810.1), Bat_KX442564(ASL68942.1), Bat_KX442565(ASL68952.1), Bat_KJ473821(AHY61336.1), Bat_KX574227(ARJ34225.1), Human_MERS_MG987420(AWH65941.1), Human_MERS_MG987420(AWH65942.1), Human_MERS_MG987421(AWH65952.1), Human_MERS_MG987421(AWH65953.1),
Cluster6
Bat_NC_009020(YP_001039961.1), Fish_NC_034440(YP_009361856.1), Human_MERS_KM027262(AIL23989.1), Human_MERS_KF961222(AHC74097.1), Human_MERS_KF961221(AHC74087.1), Human_MERS_KM027261(AIL23978.1), Human_MERS_KM027259(AIL23956.1), Human_MERS_KM027258(AIL23945.1), Human_MERS_KM027257(AIL23934.1), Human_MERS_KM027256(AIL23923.1), Human_MERS_KM027255(AIL23912.1), Human_MERS_KM027260(AIL23967.1), Human_MERS_KJ361500(AIZ74416.1), Human_MERS_KJ361503(AIZ74449.1), Human_MERS_KJ361501(AIZ74426.1), Human_MERS_KJ361502(AIZ74438.1), Bat_EF065509(ABN10874.1), Bat_KJ473820(AIA62342.1), Bat_MH002340(AWH65908.1), Bat_MH002340(AWH65909.1), Bat_MH002341(AWH65919.1), Bat_MH002341(AWH65920.1), Bat_MH002342(AWH65930.1), Bat_MH002342(AWH65931.1),
Cluster7
Murine_NC_012936(YP_003029844.1), Murine_NC_001846(NP_045298.1), Murine_AY910861(AAX23975.1), Murine_JF792617(AFG25768.1), Murine_JF792616(AFG25758.1), Murine_JQ173883(AFD97615.1), Murine_GU593319(ADI59786.1), Murine_AF208066(AAF69331.1), Murine_AF208067(AAF69341.1), Murine_AC_000192(YP_209229.2), Murine_AY700211(AAU06353.1), Murine_MF618252(ATN37886.1), Murine_MF618253(ATN37894.1), Murine_FJ884687(ACO72890.1), Murine_FJ884686(ACO72881.1), Murine_AF201929(AAF19383.1), Murine_AB551247(BAJ04692.1), Murine_KF268336(AGT17713.1), Murine_KF268339(AGT17746.1), Murine_KF268338(AGT17735.1), Murine_KF268337(AGT17724.1), Murine_JX169866(AFO11505.1), Murine_JX169867(AFO11514.1), Murine_FJ647222(ACN89729.1), Murine_FJ647219(ACN89703.1), Murine_FJ647227(ACN89779.1), Murine_FJ647221(ACN89718.1), Murine_FJ647220(ACN89709.1), Murine_FJ647218(ACN89685.1), Murine_FJ647226(ACN89769.1), Murine_FJ647224(ACN89745.1), Murine_FJ647223(ACN89736.1), Murine_FJ647225(ACN89759.1), Murine_AB551247(BAJ04693.1), Murine_AC_000192(YP_209230.1), Murine_AF201929(AAF19384.1), Murine_AF208066(AAF69332.1), Murine_AF208067(AAF69342.1), Murine_AY700211(AAU06352.1), Murine_AY910861(AAX23976.1), Murine_FJ647218(ACN89691.1), Murine_FJ647219(ACN89699.1), Murine_FJ647220(ACN89704.1), Murine_FJ647221(ACN89720.1), Murine_FJ647222(ACN89724.1), Murine_FJ647223(ACN89737.1), Murine_FJ647224(ACN89748.1), Murine_FJ647225(ACN89757.1), Murine_FJ647226(ACN89771.1), Murine_FJ647227(ACN89772.1), Murine_FJ884686(ACO72882.1), Murine_FJ884687(ACO72891.1), Murine_GU593319(ADI59787.1), Murine_JF792616(AFG25759.1), Murine_JF792617(AFG25769.1), Murine_JQ173883(AFD97614.1), Murine_JX169866(AFO11504.1), Murine_JX169867(AFO11513.1), Murine_KF268336(AGT17712.1), Murine_KF268337(AGT17723.1), Murine_KF268338(AGT17734.1), Murine_KF268339(AGT17745.1), Murine_NC_001846(NP_045299.1), Murine_NC_012936(YP_003029845.1), Murine_FJ938068(ACT11039.1), Murine_FJ938068(ACT11038.1), Murine_NC_048217(YP_009824978.1), Murine_NC_048217(YP_009824979.1),
Cluster8
Bat_EF065512(ABN10901.1), Bat_EF065511(ABN10892.1), Bat_EF065510(ABN10883.1), Fish_MN611520(QHA24686.1),
Cluster9
Hedgehog_MK679660(QCC20711.1), Hedgehog_NC_022643(YP_008719930.1), Hedgehog_NC_039207(YP_009513008.1), Hedgehog_MK679660(QCC20712.1), Hedgehog_NC_022643(YP_008719931.1), Hedgehog_NC_039207(YP_009513009.1), Hedgehog_KC545383(AGT28262.1), Hedgehog_KC545383(AGX27798.1), Hedgehog_KC545386(AGT28265.1), Hedgehog_KC545386(AGX27809.1),
Cluster10
Ape_MG977449(AWW13548.1), Ape_MG977447(AWW13532.1), Ape_MG977445(AWW13516.1), Ape_MG977444(AWW13508.1), Camel_KF906251(AHN64789.1), Camel_KF906250(AHN64780.1), Camel_KF906249(AHN64771.1), Camel_MN514967(QEY10662.1), Camel_MN514966(QEY10654.1), Camel_MN514965(QEY10646.1), Camel_MN514964(QEY10638.1), Camel_MN514963(QEY10630.1), Camel_MN514962(QEY10622.1), Camel_KT368891(ALA50077.1), Canine_JX860640(AFW97356.1), Canine_KX432213(AQT26494.1), Cow_MH810163(AZU96325.1), Cow_FJ938066(ACT11016.1), Cow_FJ938065(ACT11004.1), Cow_NC_003045(NP_150073.2), Cow_MG757142(AVI15051.1), Cow_MG757141(AVI15040.1), Cow_MG757138(AVI15007.1), Cow_MG757140(AVI15029.1), Cow_MG757139(AVI15018.1), Cow_AF391542(AAL57305.1), Cow_AF391541(AAK83365.1), Cow_KX982264(ARD06006.1), Cow_MH043955(AVZ61126.1), Cow_MH043953(AVZ61106.1), Cow_MH043954(AVZ61116.1), Cow_MH043952(AVZ61096.1), Cow_AB354579(BAF75628.1), Cow_FJ938063(ACT10980.1), Cow_FJ938064(ACT10992.1), Cow_DQ811784(ABG89291.2), Cow_KU558923(ANJ04725.1), Cow_KU558922(ANJ04714.1), Human_OC43_AY585228(AAT84351.1), Human_OC43_AY391777(AAR01012.1), Human_OC43_MG197721(AXX83366.1), Human_OC43_MG197720(AXX83360.1), Human_OC43_MG197719(AXX83354.1), Human_OC43_MG197718(AXX83348.1), Human_OC43_MG197722(AXX83372.1), Human_OC43_MG197717(AXX83342.1), Human_OC43_MG197716(AXX83336.1), Human_OC43_KY369907(APU51939.1), Human_OC43_MN306053(QEG03790.1), Human_OC43_MN310476(QEG03800.1), Human_OC43_KY369905(APU51923.1), Human_OC43_KY369906(APU51933.1), Human_OC43_KY983588(ARU07606.1), Human_OC43_KY967356(ARK08632.1), Human_OC43_KY983585(ARU07583.1), Human_OC43_KY967358(ARK08647.1), Human_OC43_KY967359(ARK08657.1), Human_OC43_KY983583(ARU07564.1), Human_OC43_KY967360(ARK08667.1), Human