CoVDB Coronavirus Database (v3)   
Strain
shrimp_AF227196 (Region: Australia;  Strain: Gill-associated virus from Australia, complete genome.;  Date: 1996)
Gene
ORF1a polyprotein pp1a
Description
Annotated in NCBI,  ORF1a polyprotein pp1a
Location
AF227196(+):69-12251
GenBank Accession
AAF82689.1
 

Sequence

CDS
ATGGAGCCTTTTGAGGTTCTATTGTTGTTGGCAACATCCCTCAGTCTCTTCCTATTGCTTAGGATCCTCGACCGTGGCACGACTGTTCTGTCTGCCGTCAGATTGACTCTCAGGACCACTTTCTTCAATGAAAGTGTACGAAGCTCGCTCGAATGGACCAGCCCCGCTAGATGGTTCGATTCATCTAGCAAGACTACCACCAGGATGGACAAACGCTCGATCAGAAGTGTGAAGCTAACCAGCGCCCATGGATCGCAATATCCCTCTGTGGTCACACTCACTGTTCTCGCCAACGATGCATACGACGCTCGCGCTTTCTTCCGCAGCAATCAACACGCCGCGCAGACCATATTCTGGTTTGGTGCCCTCTTCAATGCGGGATTGGTGTTGTGCGGGATTGTGCTTTCGTTGCCTGCTCTGACCTACATTTTGGTTGCCAGGTTGACAACCAGGCTAAGGGATTTCCTTGTTGCCGTAGGTGCGACCCGATCATCCGAAAACACATCATGCAGTCACGAGAAAACCCATGCTCTGAAGAGCTCTGTTCGGTCTTCAATGATCAACCTCCAGAGCTTAGTAAGGCGTGTCGGCCCTCTCCTCCCAATTGTCACAATCATGTGTTGCACTCCACCAACCGACGCATTTGAGATCACTATCGCCCCACGTGTCACTCTTGATACAGGACTTTCTGCGATCTCCCTGCTCATTACTGCAACCTGGTTGATTAGACAAATCCAACTATCCCAAGTACGTCCCGAAATGAACTCATCTCTCAGCACTGTCGTAGGATTGATCACCATCATTTTCCTATCATGCATCACGATTGTAGGTGGAATCACTGCACCTACCAATCCCTCAAGAATTGGGCACGGTATGATTGCACCCTTCCTCCTCTTCATCGTCATGTGGCTCTCTCTCCGCTATCTTCTCACTATTTCTCTTCGTCTATTTCCAAAACAACTTCTCAAGTATTACACTCGTAACGACTTCCATCTATATTTCCTCTTCTCCTACCAACATCATCTTCCTGAAGTAACACTCAAGAAGGGCATCATCTCAAACGGTGCATACACAGACCACTATCACACCACTACTAAATTTTGTAATGGATGTGTTGGGTTTGGGCACCTCGACTCTGAATGTTCCAAATACACACACACCGTTTTCAGCTACAAACGCTACTACAACATCCCATCAGGACAGCCAGTCGAAGCCTATCTTGAGGTACACACACAAAACGAGATCTTCACATACAACGACACTGTTATCATCCGTGGCGATCTTGTGTTCATCAACAAAACACTGAAGGACTATGATCACACCACGCTCGGTCCCCTACATCCGGAAGATTTTCCACACCTAGCTGTTCGCCGCGTTGACTACATGCCAGTGGTTAATGTAGACGGCACGATTAGGATCTTCCCAAACACGAAATATTACAATCACACGGAGTACACACTTGACAAGGAGTCAGACATTGATACTGCACATTATCAGACGATTTACAGACAGACTACACCATTCAAGATTGATTATGATATTCCCTGTGGCATCATCCCTCATCCAGACACCACAATCGTCCACACCCAAGGATATGTCAATAGCCATGTTGAAATCGACACATCTTCTGTCAATGATAACATCTCTCTTCGTCCTAATTCCACAACTTTCTCTTGCTCACAGTCTTCATCTTCTGCTGCTAGCACATTTTCCTCTTCTTCATCGATCCCTGCTAGTTCTGCGAACTCTCTTGCACAGAAATCAACTAAGGACCAGGTATTCAACTACATGTCGATCAGGCCTAAGCGCATCTACAACTCGTCAACTGATCCCATCGCTAGCCTTCTCCCTGTTCCTTCCAACGCTGACCCTTACAGTCATGTTTACCCCGTTGAACTGCAATACGCATTCCCGGGTTGGACAGCTGATGAGATAGTCAACGACGCAGACGGCATCACCATCCATGAATACACAAGCTGCAAGCAAACAACTAAAGACTTCTTACGCACAATCGATCCTCAAAAGTTCAGCGCACATGTCAACACACGCAGCACACCAACATTCGTCACACTGCACAACGGTTGTATCTGGAACACAAACGATCCAATCATCGACATCGGCATCGCCAGCGCCAATAGGCCCGACGGTGTTAGTCAGATGATTCCAGACATGACCAATGCATATAACGTCCCCCCTCCAGCCAGGCGCCTCGGGTCATACACAAAATCCGGCCGCGTCTTCTGCATCTGGGGTGCTCGTGTCAACACCGCTCCAACACCATGTAAACACGTCAACTCATGCTACTGTCTCGACACCAAATATCACCGTTACAACGCATTCTACAATGCCGTCTCTACGATCATCAACCGCGAACAACTCACGATGGTTTCGATGTCGTTAAATGTCGGCTGTGGTCCGCTGCAGGGTGATTGGCATACATATGAGCAGATCATATTCCGAGTCGCCAATGAGACGCAATGCTACATCAGGATCTACATGAACAACGAGACAGGTGCACATCACAACCCGCTCACAAATCAGACCGGCAAGAACCGTAAGAAGTGGCATGTGTACAAGGTCCAAGAGACAAAGTTGCCCATCAACAAAACACTTCGCTCTGTCAATGTGTCTCAAGCACAGCGAAAACGTGAGCAGACACGCCATACACTCTCTACATTAACTCCCATCACTCCTCACAAGAACACTATACCTGAACTTGACGAGGTCCCACAGAACTTTGTAGAGCATTGCCACCTTTTCTACAAGCAAAGACATGCACAGATCACAAATCTCCTCTCCCTCTGCCTCGGTATCATCATTCACCATTACATTTATGACATCATTCACGGGCTCAGGGTCATCGAATATCTCGAGATCATTATCATGTGCACCATCTTCACTATCACAGTCATCTCATCCCATAACTACAAGATTACCACTGCATCTGTCACACTTGCGGGTACTCTCGCTGGGAACAACCCTGTCACCTGGATCTGCTTCGCCCTTGCTCACAAGCACAGTATGCGCTTCAGTCTCCAGATTCTTGGTATTCTCAACGCGATCAACCCGTACAGTGCATACACCGGAACACTCTGTTTCCTCTTCTACACCCTCTCCCCTTCTACATGTACATCTCTCATCCGCTTCACCCTTACACTTCTCCTCACAGTCACAGGAGCACAAGCACATGAGACAACACATGAATCAGATACCAAACATATCTTCACACACTTCACCCGCCTCATCGTCTACGCACTGTGTGCACATATCATCTACACAATCGTTAAGATGCTTGAGCCACGTGAAGAACACGAGACAGTTTCATGCAGCACAACGCAGACATCAAACTTCAGATCCACACACCGCCGCACCACCACATGTGCATACACGCAGCCAACAACACCTGCTGTTGTCATCGTGGTCGCCCTCACACTCACTCTGATCGTCAGTACTGCCAATGCACATCAAATCTTCTCTCGTGACCCTTCACACAAGTTCTACTCATACTACGAGCCTATTGAGGACTGCGCAGATCCAGCATACATCGGCCAAATCGACTATGACAGGTTCTGGAAAATGCCAAGCACATTCCAATTTCCAAACGGCATGACCCTTGAGGATTACCTAATGGAGGAAGTCTGTTATGACGAATCCATTTTGGACCTCATGCATCCCGTTTATGTCATCGAAGGAATTCCCCTCGAAGTCACCCAGGCCATCAGCTGCGATCATCACCTCCGCGTCAACAAGACCCAACTCTCCTACTGCCTCGAAGAACGTGTCAGTGAGGAGGATATGACCCTAATGACGCAAGCACAGCTCAAGAAGTTCGCGCTCAAGTACAAACGACGCGCAGATCAAGACACACCCATCTCTCACACAGTCCAGACAATCAACATCGTGGGCATCACTCTCACATACAGATCAAACCACACATACACACTTCCATACGGTACACTCACTTGTAACTCTGAACACGCATACTGCTCATACATCGCTAAGGTTCTCGGATCCGAACATGATCTCCCTAGCAGTGCCCTCCAGTACTGCCATGGCAATGAGGACTTCTGCGAGTATAAGCGCTTCAACGACGCCGACCTCTGCACTCTTTATTATCGTGACCTCACCATCGCACCCGACACTGACCCTGAAGACTTCAAGCTCGCCCAACAATTCCGTGAGCATGTCGCATCTCTCTGTGGAATCCGTGCACGACTGCACACCAGCGACGGCACCCCAACACCCACTGTCCGCCGCGGTGAATGGTACGCCACCACCCTCCGTATTGCCAGTCACCGGTCACGCAACACTCAGTGTATCGTCAACGTCTGTGGCGCTGTGCCAGCCGATTTCCTCGACCAGGGCATCCCATTCGACTATCAATTCGTCAACGATTGTTCACCATCAAATACCACAGCTGATTGCGTTGCTATTGACTTCGCATATGAGTTCGCATATAGCTACATCCATAAGAAGGTAATGCACAATGGTCATGTTCCTTACATCACTAGGATCATGAACATTATTCCAGACATTCCTGAAGCATACTCGCGACTCGCCGCCATCTACAACGCTGTGGTCAACATTCCCTCTGAAGAAATTGTTGATAGGTTGTATGAACAAGTGGACAACACAGCCCAGCTTGCCACACGACGCCTTGAGAGCATCATGCATGTTCCGAAGATGGTCAAAACAACAGCAGAAGCTCTGTTCGCTGAACGCATTGTCAAGAAATACACTCTCGTCGGTATTAGAGAGCTCTGCCTGGCTAGATTCGAAGAATCAGTCTGTAGACGTCTAATTATCGCCGTCAATGGGTTCATCAACAATGATCATCTCATCATCGAAACCGATCTGGACAAATCCACATTCACAGCTCTATATCATTTCATCACCAAACACTACAATACAAAGTACACCGCACCTCAACCTGTATGCAAAACACTGAAGAATATGACACCAACACAGCGCTACATCAGTGACTGCGACACGCAACTTGAGCTCGGGCCGAAACATATAAACTTTGTCGAAGGTCAGGTAGATTACACCCGTAGGAACATCACCATCCTCCACAATGTCCCTACCAGTCAAATCGACGTCATCTTCACCACCACCGGCACTGAATACTACGATTCAAATGAGCATCAATTCGCTGTCATCACCGACAAACGCTACACCATCAACTCCACAACATATACCCTCCCATCTGATCTAACACTAAGGGCACAAAACAGAAATAAACAGAGCAGACATTGGCACAACTACGGCCACCGCTTCTACAATGCAGAATTGATAAAGCCCGGTACCAACCGTGGACACATGATTCCATCATTCCTCGGCGGCCCAGCAGTTTACGCCAACGCCTTCCTGCAGACAATCCAAGCCAATCTTGATGACACTACATACGAAAATCAAGCAATAAACGCCGTGTACAACAAGCGAATCGTCAGCTACTACCCAAATGACATCATCATCGGCGATGCATCAGATCCCTGGTGTTACATCAATCCCTCCACATCTCCATCACCTACACTTGCCCTCCCACGTAGTGTTAGTGAAGCCGAGACGTTCATTCTCACCCACGGTAACATATACACCGTCACACATGATCATCCTTATCACACTGAGGAAGAATTTAAACTCATCCGCTCTCTTGCCCTCCCTTGTGGCGTTTACTCTTACGCTATCAGTCTCAATGGTGAAACCGTACGTCGGTGGAATCCATCTGATCAAACTGGTGGTAAGACACTTCTTCATCATCCCATCAACACTACACATATCAGAACATGGGAACTCGCCACTAACACACTCAAGACAGCCATCACTGCAGTCGCCAAGCTCCGTCACCCGGCCCTCGCCACACTCGGTCTCTCCCCGGACTTCATCGCCACTGCACACCCGTTACACATCCGAAATACTCTCGGCTCCCTGTACACACACCGGCACCTCGCCTACCTCCTCCCAATCGCTCTTCGCTGTGCCTCTGGTGTTGCAGTCAACTTCGGTGTTAACACACCACTGAACTGCACATCGGACAAAGGATACGGTATCAACCAATCTGGTCTCCCCTCACTTGAACACAACACACAGAATTTCACCGCCATTAACACTGAAATCCCTACTACATACACACTGAGTGGTGATGTCCGTGACATGACATGCCTCTACAACTCCATCAGGCTGTGGGCTGACAGTAACGGATATTCAACCTCGTTCACAGACACCGCTGATATCACCTTCAGATTCAATAACTCCGTTCCCTCCACACGTTGTTACAGTTACAAGATCCCACCAACACACGCATGTGACAGTCCTACATACGACATCCCACATGAAGATCTCACCTACTACCAACAGGCAGCACTCGCAGTAATCTGTAAGGGACATAACAACATGTACTGTCAACAGTTGGACATCGACAGTTATCCGCGCCCAACATACTCAGAGTTCATGGATAATCTCCTAAACCTGACATGTGGCACCTTCAACATCACCGACTCTGTCCAATGTTGTGCATCTCAATACCAGATCATTCACATCCCTCCACAGGACTACAACACCACACTAACACAGCTTGCACACACCCACATGCATTGCCCAGTTTACATAGAACAATCCGATGACATCAACAACTCTAGCTCCGGCCTGTACACTTACAGCTATGGCGGCAGGGTTATCGGATCCAGTGATACGCTCGGTGTTGCTCGTCTCCCCTCTGACATCCTCATTCTATACAAGAACATCACTGAAGTCAGGTTCAACACTAACACACAACTGTGTCACTCAGACGGAAACAACACTCTCTTCCACAATGGCTGTAATCTCAACATCTCACATGGTACACCGTCAGAACCTCTTTACACAACATACCCTGACAAGCACCACGACATCATCCAAGCGCAGCTCACACAGGACATTCTCAACACGCTCATCAACACAACTGGTTCACTCAACATCATGAAATATCGCCGTTCAGCCCTCAATCTAACATTCCCAAATCATCCAGTGGATATTAAGGTTGAGCAGATCGACGGTTGCCACATCATCGGTGAAACAGTCCTCGAGCAATACAACCGTGACTATCAGATCACCTACGAATATCCTGCTCTTGATGACGTTCTTGAGATCACTGTCCCAAACAACTTCGCCATGGAACAATTCTACCGCTCCGCCCTCAGCCACTGTTACCAGCTCCGCTTCATCTACACAGACAAAGTCATCAACATTAACCCCAGCCACACCACTAACAACTGCCTATACCTCACAAAAATCGCAGACATACAGGTTTCAGGGAGTTTCTGTGACTACGCACTTCCATTCAAGTTCTACACCACCTCAAATGAGCGATGTCACAATTACATCCGTAACCTCATGGAGATCTATGGTGTCCGGGGTATAGATCTGCCTCTAGGATTCCTCGACAAGGTAGAGTGTACAAACATCGAAGACACAAAGATCGAAATCATCAGCGACAAGTGGGGTAATGATACATTCATTCACCCTGGCTCTGCACGTGACACGTGGGGCCACAATGTTGTCGTCAACGAGTACACTACCGAAGGTGCATTGATCAAATCACAGGTGTATAACCAATCATACTTCTCCTTCCTCGGCGGCCGCGTCTACCGTGACAATACTTACTGTCTCGCACGGCCCTATGAAACAATGTCTGTTTACATCACACCCATTTGTTCATCAAGTTCACCTTCTCGCTGGTCACTCCTCTACAACATTCCACTCACCTACTTCCACCACGCGCAAGCCTCATACCACGACACCCTCGATCACTCCTCTGTCTACAGCCTCATGATCATCATTGTCTCGTACTTCTTACTCACACGCTTCTTCGAGCCTGTCACTGTTTGCTTCATCTACATTCTCATCACAAATGTATTCGCACTCATCATCTATCAGTCCCGCGACCTTGCATACATCAGTAGTGTCATCGCAGCCTTCTTCGGCACTCTCACCGCCGTTCTCCAGCGCTGCATGGTCATTCCTACTGTTCTCTCTTTCCTCTTCACCATGACTTCATACTGTAAGAAGGGTTCCATGATGAAGCGTCCGCGTGATCATTTCGATATGTTCGTCGCAACTTCATTCATGGCCTTCTCGCTCATCAACATCGGATACATCTTCCTCCTCACCGGAATCGTCATCTTCATCGGCCTGTACAAATTCATCGTCTCTCAATTCACCCAAGCACACTGGCGTACCTACGTCAATGTTGCAGTTGGCATTGAGGACATCGCTGCTCTCGGTTACACGCAGACCAATCAGGTTAGAAAGGCAGCAGATGAACTCATGAAGAAATCGACTGATGACAAGTATAGCTACTACCAGCAGCTAGATGCTTTCGTACACGCCGCCTTCCTCAACGCATATGCCCAGGCAATCGATTCCAAAATTCCCCTCAACTTCACCCATCGCAATCTCAACTTCCGCGTGTCGCAGCCAAAGACCAACTTCCTCGTCGGACTAGTCACACATGAGGTTCGTACAGGTAACGCCACCACGGTCGAAGATCTCAACAAGCACCCATACAACAAGTACCGCAAGAATATCGTGCGCGTGTATGGTGAGCGCGGAGATCTCAACGGCTTCCTCAGCGGCAAATCCCTCCACTTCCCTCGACACATCTTCGACACCTGCACTGACAACACACTCACACGTCACATTCGCGTCACAAAGGGTGAAGAAACACACGACATCGAGCTTTTGAGTGAAGAATATGATGCTACACCATTCATCAAAGTTGAGAGCCCATTTGCCGAGGCCACCGAGCTTAAATTCGCAAAATTACAGCGAACACAGCACGTCTATTTCGTCACTGCTGATGATATCAGGCTCGGCTCAATGTCCACTGATGGTTATCACAACATCTCCACCAAGGATGGTGATTGTGGTTCCATCATCTTCGACCACCTCGGTAATGTCGTCGGTGCCCATATCGTCGGTATCTCCTGCATCCCTCCAGTCAACGGTGCCCTCACATGGAACCCTGAGACTGAATTGTTATGCGGACCCAATGCCGACTATGACTTCGATCCTACCAAGGTCGATCCACCAAAGGTCTGGCCCGTCGAACCTGTCACCGCTCTCAGCACCGTCCTCAACCAGCTCAACTACGTCACCGGTGATGCCTTCACAACACCAAAGCTCCCCACCAACTATCAGCTAGTCGGTTGTGAGACACTGGATCAGTATGTCAATGCTTGTAATCTTGTCACCGGCCAGTTCCCTCAGATCAAGGAGGCATTAGACGATTTCATCAATGGATACGTCGCCAACTTGCAAAGAGGTGCTGAAGCCTACAACACGATCTACGCGAGCATGAGTGCACAGATCCGTATTGCTGACCTTTCTCCACTCAGCAACTCAATCACCAACTGGCAGTACCTCATCGATCCTCTCACCAGATTCCGTTGCTTCATCCTCGGGCTCATCAGGCAGTATATGCGCCACTGTATCATCTACATCCTTCTTCAGTTCGCCTTTATCTGCTTTGATCACGGATTCTTCTTCAGAGTTCTTCGAGATCCAACACACTTTTTCCTCTCTATCCTCAGCACTGTCTTCATCTCTATCAGTCCTATCGCTAGCACCAGTGCCATCTTCGTCAAATACCTTCTCAGCTACACCCTTGAATACAGATACGCCTACCTCAACATCGACACTCTCATCCAGTCATACCTCTACCTCAGTTCTCGCGAAGCAATCTTCTACACCTCTCGCCGGGTCAACAAGTTCTGCACCGCGCTCACTGTCATAGTCATGCTCTGTGTTGACACTTTCTTCGTTGAAATCGGCGGATACAATGTTCTCCCCGTTCTTATCGTCTGTATTCCTATCTTCTACCTTCGCACTATCATGATGGGTGCTGCTCAGGTCCAGGTGTACTTCGAAGCCGATCTGCACAAGCCTGCAGCAAACTTCATGACCTTCATCTATTTCCTGATCATCAACGCATTCTCCATCATCATCTACTGCTGGGGACTCTTCTCATTCAACCCATACGCTAACACTATCCTTCTTCTCACCACCGTCATACATTTCATCGCATTCTACGTTCTCTCCCAGGAAGTGCAGAAAGTATTCGAGTCTAACACTTTCCGAATCCCACGGTTAGTGTATGCCATTCTCTCGTACGCCTCCCACATCCTCTGCCATATCTATTCAACATCCCTGAATAAGGTGTGTGAGTGGATCCTGCGGGCTCTCATCCACGCAGACCGCTCTATCATCATCGGCGTCGGAGCACTCTGTCTCTTCCTCCTCATCTGTCTTTTCCTCATCTTCTGCAGGAGTTCAAACACAGTGAAACATGAATCTAATGACATCAAAGACGCACACACACGCTTCGACTCATTCGCTAAACTCACCACACTCATCGCAAACAATCCTAAACTTGCCTGCATGAAACCACTCTGCGTTGACTACAATGACAATCGTGCGCGTATGACCCTCAAAGAAAAAGGTAACTGGGTTATCAAGGTGCGCGACGCTCTCCTCACACAGTTCAGCCTCTCAAATCCCGCTGATCTAGCTGATGTGATCCATGAGTGTGCCAGTCATCCAACTCTGAACAAGCTATTCTTCGACAGCTCGAAAGGTTTGAAGGTCTACCATGAGATCGACTTCAAGATCGATCACGCCCCGTACACCGGTGATGATGAGCAGATCCGTGCAGATACTGCCCTCCTCGCTGAGTACAGGAATGAACTCAACCTTATTGAATGGAAGATAGTCACCTCCCAGAAGGAACTCTCAGATGCAAAGTCCGCAGAAGATAAAGAAAAGGTCAAGTTTATCAACACACAGTTAGCCGACCTTATGAAGCAGCGTAAGACACTCATCACCATCTCTAATACCTTGAACCAATCAATCATGGCTAGAGATGCTAAGAATCGCCGCACTGCCAAACGACACGCTAACGAGGAAGCAAACGAAATCGCCCGTGTAATCAAGGCACAACGTCTTCGCGATTCACTCACACTCATCTTCAATACATTCATCAACAATCTCATCAAACTCACATCTGACTGTAATGCATTGAAATCATACGCTGACAATGTGCTCAAGTATGTGCCTGAAGAAACTAAGGACTTCCTCAAACGTGCTGATAACTGTTACCGTCTGTCACAGGACCTGATCCTCATCGAAACACCTGCCAGCCCTCTCTCCTATTTCAAGGAAAAGAACGGCATCATCGAGGTCACCAACTCCTGTAGCTATGACACCTTTAAGGACGGTATGGTTGTTAATCACATCCTCGACGGCACTACTAAGCTTCCTTACACTCTCGACTCACTCAAATCATCCACACGCGTCGTGTGTTATGAACCAGATTCATCAACCAGCCGGCAAGACACATGCACCCATGACGTGAACGCCAAGGTCGGTCAGATCCTGCCCTGCGGTACTGCTCTCGAGTGCAAACACCAACACTACCACAACCAATTCGACTGCACCTCTGGCTACTTCGCCTTTATGGCTCAACACGTCACCGAATGCGAAACATGTCTCGACATCTTTAAGCGTGGACATTGTGGATGCGGATACCGATACAAGGTTCCCCGTGTTCTTCAGTCGTTCATCCTTCACGGTTCGAAATGTTCGCACGTCACCCACGAACTCAGTTACTCAGGCACCGCTGCAGCTTTCAAGCCGTATTACGATGAAGCTACAGGTGGTATCATGTACAAGTCCGCCGTGATCGCATATCTCAAGAAGCCAGACGTTTACACAAGTACATTCACCTACAACAATGAAACATACTATCTTCCCGTTCCTCTCACCCATGACATCGTCTCCATCCTCATCGCCTTCGCCATACGCAATGGTTCTATCCCTGTCGGTGAGGCACAGTTCGAAGCATGCTTTGACCGTGTTGACGTCGATGAAGACAGTAACCTCCAATCATACTCTCTCACCGACACACCATGTGCCAATGATGATCAGATCTGTTACCAGATTCAGAAGTGCCCATTCCACAACACAAAGGATAGTGCATGTATGATCTGCGCAAATCTTGATGACGGGATCTATTCCATCGTTCCTGCTGAATCATCATTCCATGAATTGGCGAAAGAACTCTCCATCACACTCACAAACGTCACCACTCCCATCCCAGTCAAGCACGAGGCAAATTTTCAGACAAAGCCTCGTCGAGTCTTCCAGTAA
Protein
MEPFEVLLLLATSLSLFLLLRILDRGTTVLSAVRLTLRTTFFNESVRSSLEWTSPARWFDSSSKTTTRMDKRSIRSVKLTSAHGSQYPSVVTLTVLANDAYDARAFFRSNQHAAQTIFWFGALFNAGLVLCGIVLSLPALTYILVARLTTRLRDFLVAVGATRSSENTSCSHEKTHALKSSVRSSMINLQSLVRRVGPLLPIVTIMCCTPPTDAFEITIAPRVTLDTGLSAISLLITATWLIRQIQLSQVRPEMNSSLSTVVGLITIIFLSCITIVGGITAPTNPSRIGHGMIAPFLLFIVMWLSLRYLLTISLRLFPKQLLKYYTRNDFHLYFLFSYQHHLPEVTLKKGIISNGAYTDHYHTTTKFCNGCVGFGHLDSECSKYTHTVFSYKRYYNIPSGQPVEAYLEVHTQNEIFTYNDTVIIRGDLVFINKTLKDYDHTTLGPLHPEDFPHLAVRRVDYMPVVNVDGTIRIFPNTKYYNHTEYTLDKESDIDTAHYQTIYRQTTPFKIDYDIPCGIIPHPDTTIVHTQGYVNSHVEIDTSSVNDNISLRPNSTTFSCSQSSSSAASTFSSSSSIPASSANSLAQKSTKDQVFNYMSIRPKRIYNSSTDPIASLLPVPSNADPYSHVYPVELQYAFPGWTADEIVNDADGITIHEYTSCKQTTKDFLRTIDPQKFSAHVNTRSTPTFVTLHNGCIWNTNDPIIDIGIASANRPDGVSQMIPDMTNAYNVPPPARRLGSYTKSGRVFCIWGARVNTAPTPCKHVNSCYCLDTKYHRYNAFYNAVSTIINREQLTMVSMSLNVGCGPLQGDWHTYEQIIFRVANETQCYIRIYMNNETGAHHNPLTNQTGKNRKKWHVYKVQETKLPINKTLRSVNVSQAQRKREQTRHTLSTLTPITPHKNTIPELDEVPQNFVEHCHLFYKQRHAQITNLLSLCLGIIIHHYIYDIIHGLRVIEYLEIIIMCTIFTITVISSHNYKITTASVTLAGTLAGNNPVTWICFALAHKHSMRFSLQILGILNAINPYSAYTGTLCFLFYTLSPSTCTSLIRFTLTLLLTVTGAQAHETTHESDTKHIFTHFTRLIVYALCAHIIYTIVKMLEPREEHETVSCSTTQTSNFRSTHRRTTTCAYTQPTTPAVVIVVALTLTLIVSTANAHQIFSRDPSHKFYSYYEPIEDCADPAYIGQIDYDRFWKMPSTFQFPNGMTLEDYLMEEVCYDESILDLMHPVYVIEGIPLEVTQAISCDHHLRVNKTQLSYCLEERVSEEDMTLMTQAQLKKFALKYKRRADQDTPISHTVQTINIVGITLTYRSNHTYTLPYGTLTCNSEHAYCSYIAKVLGSEHDLPSSALQYCHGNEDFCEYKRFNDADLCTLYYRDLTIAPDTDPEDFKLAQQFREHVASLCGIRARLHTSDGTPTPTVRRGEWYATTLRIASHRSRNTQCIVNVCGAVPADFLDQGIPFDYQFVNDCSPSNTTADCVAIDFAYEFAYSYIHKKVMHNGHVPYITRIMNIIPDIPEAYSRLAAIYNAVVNIPSEEIVDRLYEQVDNTAQLATRRLESIMHVPKMVKTTAEALFAERIVKKYTLVGIRELCLARFEESVCRRLIIAVNGFINNDHLIIETDLDKSTFTALYHFITKHYNTKYTAPQPVCKTLKNMTPTQRYISDCDTQLELGPKHINFVEGQVDYTRRNITILHNVPTSQIDVIFTTTGTEYYDSNEHQFAVITDKRYTINSTTYTLPSDLTLRAQNRNKQSRHWHNYGHRFYNAELIKPGTNRGHMIPSFLGGPAVYANAFLQTIQANLDDTTYENQAINAVYNKRIVSYYPNDIIIGDASDPWCYINPSTSPSPTLALPRSVSEAETFILTHGNIYTVTHDHPYHTEEEFKLIRSLALPCGVYSYAISLNGETVRRWNPSDQTGGKTLLHHPINTTHIRTWELATNTLKTAITAVAKLRHPALATLGLSPDFIATAHPLHIRNTLGSLYTHRHLAYLLPIALRCASGVAVNFGVNTPLNCTSDKGYGINQSGLPSLEHNTQNFTAINTEIPTTYTLSGDVRDMTCLYNSIRLWADSNGYSTSFTDTADITFRFNNSVPSTRCYSYKIPPTHACDSPTYDIPHEDLTYYQQAALAVICKGHNNMYCQQLDIDSYPRPTYSEFMDNLLNLTCGTFNITDSVQCCASQYQIIHIPPQDYNTTLTQLAHTHMHCPVYIEQSDDINNSSSGLYTYSYGGRVIGSSDTLGVARLPSDILILYKNITEVRFNTNTQLCHSDGNNTLFHNGCNLNISHGTPSEPLYTTYPDKHHDIIQAQLTQDILNTLINTTGSLNIMKYRRSALNLTFPNHPVDIKVEQIDGCHIIGETVLEQYNRDYQITYEYPALDDVLEITVPNNFAMEQFYRSALSHCYQLRFIYTDKVININPSHTTNNCLYLTKIADIQVSGSFCDYALPFKFYTTSNERCHNYIRNLMEIYGVRGIDLPLGFLDKVECTNIEDTKIEIISDKWGNDTFIHPGSARDTWGHNVVVNEYTTEGALIKSQVYNQSYFSFLGGRVYRDNTYCLARPYETMSVYITPICSSSSPSRWSLLYNIPLTYFHHAQASYHDTLDHSSVYSLMIIIVSYFLLTRFFEPVTVCFIYILITNVFALIIYQSRDLAYISSVIAAFFGTLTAVLQRCMVIPTVLSFLFTMTSYCKKGSMMKRPRDHFDMFVATSFMAFSLINIGYIFLLTGIVIFIGLYKFIVSQFTQAHWRTYVNVAVGIEDIAALGYTQTNQVRKAADELMKKSTDDKYSYYQQLDAFVHAAFLNAYAQAIDSKIPLNFTHRNLNFRVSQPKTNFLVGLVTHEVRTGNATTVEDLNKHPYNKYRKNIVRVYGERGDLNGFLSGKSLHFPRHIFDTCTDNTLTRHIRVTKGEETHDIELLSEEYDATPFIKVESPFAEATELKFAKLQRTQHVYFVTADDIRLGSMSTDGYHNISTKDGDCGSIIFDHLGNVVGAHIVGISCIPPVNGALTWNPETELLCGPNADYDFDPTKVDPPKVWPVEPVTALSTVLNQLNYVTGDAFTTPKLPTNYQLVGCETLDQYVNACNLVTGQFPQIKEALDDFINGYVANLQRGAEAYNTIYASMSAQIRIADLSPLSNSITNWQYLIDPLTRFRCFILGLIRQYMRHCIIYILLQFAFICFDHGFFFRVLRDPTHFFLSILSTVFISISPIASTSAIFVKYLLSYTLEYRYAYLNIDTLIQSYLYLSSREAIFYTSRRVNKFCTALTVIVMLCVDTFFVEIGGYNVLPVLIVCIPIFYLRTIMMGAAQVQVYFEADLHKPAANFMTFIYFLIINAFSIIIYCWGLFSFNPYANTILLLTTVIHFIAFYVLSQEVQKVFESNTFRIPRLVYAILSYASHILCHIYSTSLNKVCEWILRALIHADRSIIIGVGALCLFLLICLFLIFCRSSNTVKHESNDIKDAHTRFDSFAKLTTLIANNPKLACMKPLCVDYNDNRARMTLKEKGNWVIKVRDALLTQFSLSNPADLADVIHECASHPTLNKLFFDSSKGLKVYHEIDFKIDHAPYTGDDEQIRADTALLAEYRNELNLIEWKIVTSQKELSDAKSAEDKEKVKFINTQLADLMKQRKTLITISNTLNQSIMARDAKNRRTAKRHANEEANEIARVIKAQRLRDSLTLIFNTFINNLIKLTSDCNALKSYADNVLKYVPEETKDFLKRADNCYRLSQDLILIETPASPLSYFKEKNGIIEVTNSCSYDTFKDGMVVNHILDGTTKLPYTLDSLKSSTRVVCYEPDSSTSRQDTCTHDVNAKVGQILPCGTALECKHQHYHNQFDCTSGYFAFMAQHVTECETCLDIFKRGHCGCGYRYKVPRVLQSFILHGSKCSHVTHELSYSGTAAAFKPYYDEATGGIMYKSAVIAYLKKPDVYTSTFTYNNETYYLPVPLTHDIVSILIAFAIRNGSIPVGEAQFEACFDRVDVDEDSNLQSYSLTDTPCANDDQICYQIQKCPFHNTKDSACMICANLDDGIYSIVPAESSFHELAKELSITLTNVTTPIPVKHEANFQTKPRRVFQ

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5LAK     E-value=0.002     Score=43.5     Identity=28.32%     Cov(Q)=4.26%     Cov(P)=55.10%
3D Structure

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
4060
Number of predicted TMHs:
22
Exp number of AAs in TMHs:
473.36585
Exp number, first 60 AAs:
12.79717
Total prob of N-in:
0.16512
POSSIBLE N-term signal
sequence
outside
1  -  3
TMhelix
4  -  23
inside
24  -  116
TMhelix
117  -  139
outside
140  -  258
TMhelix
259  -  281
inside
282  -  287
TMhelix
288  -  310
outside
311  -  925
TMhelix
926  -  945
inside
946  -  951
TMhelix
952  -  971
outside
972  -  980
TMhelix
981  -  1003
inside
1004  -  1014
TMhelix
1015  -  1037
outside
1038  -  1072
TMhelix
1073  -  1095
inside
1096  -  1135
TMhelix
1136  -  1158
outside
1159  -  2614
TMhelix
2615  -  2637
inside
2638  -  2641
TMhelix
2642  -  2659
outside
2660  -  2662
TMhelix
2663  -  2680
inside
2681  -  2700
TMhelix
2701  -  2723
outside
2724  -  3155
TMhelix
3156  -  3178
inside
3179  -  3184
TMhelix
3185  -  3207
outside
3208  -  3249
TMhelix
3250  -  3272
inside
3273  -  3276
TMhelix
3277  -  3299
outside
3300  -  3313
TMhelix
3314  -  3336
inside
3337  -  3342
TMhelix
3343  -  3360
outside
3361  -  3374
TMhelix
3375  -  3394
inside
3395  -  3413
TMhelix
3414  -  3433
outside
3434  -  4060
 
 
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