CoVDB Coronavirus Database (v3)   
Strain
Human_IBV_AY514485 (Region: USA;  Strain: Infectious bronchitis virus serotype California 99, complete genome.;  Date: 1999)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
AY514485(+):20372-23881
GenBank Accession
AAS00080.1
 

Sequence

CDS
ATGTCGGTATTACTTCCTTTACTAGTGACTCTTTTGTGTGCACTATGTAGTGCTGTTTTGTATGACATTAATTCTTATGTGTACTACTACCAAAGTGCCTTTAGACCATCTAATGGTTGGCATTTATATGGAGGTGCTTATGCAGTAGTTAATGTGTCTAATGAAAACAATAATGCAGGTAGTGCCTCAACTTGCACTGCTGGTGCTATTGGCTACAGTAAGAATTTTAGTGCGGCCTCAATAGCCATGACTGCACCACCAAGTGGTATGGCATGGTCTACCGCAGCCTTCTGCACGGCTCACTGTAATTTTACTAACATTGTAGTATTTGTTACACATTGTTATAAAAGTGGATCAGGTTCTTGTCCGTTAACAGGTTTCATTCAGTCAGGTTATATTCGTATTTCTGCTATGAAAAAAGAGTGTAGTGGTCCTTCTTGTTTGTTTTATAACCTAACTGAGTCTGTTAGTAAGTATCCCACCTTTAGGTCGCTACAATGTGTTAATAATTATACTTCTGTATATTTAAATGGTGACCTTGTTTTCACATCTAACTATACTCAAGATGTTGTAGCTGCAGGTGTCCATTTTAAAAGTGGAGGACCTATAACTTATAAAGTTATGAGAGAGGTTAAAGCCTTGGCCTATTTTGTTAATGGTACTGCACAGGATGTCATTCTATGTGATGACACACCTAGAGGTTTGTTAGCGTGCCAATATAATACTGGCAATTTTTCAGATGGCTTCTATCCTTTTACTAATACTAGTATTGTTAAGGATAAGTTTATTGTCTATCGTGAAAGTAGTGTCAATACTACTTTGACATTAACTAATTTCACGTTTAGTAATGAAAGTGGTGCCCCTCCTAATACAGGTGGTGTTAACAGTTTTATTTTATATCAGACACAAACAGCTCAGAGTGGTTATTATAACTTTAATTTTTCATTTCTGAGTGGTTTTGTTTATGAGGAAAGTAATTATATGTATGGATCTTACCATCCACTTTGTAGTTTTAGACCAGAAAACATTAATAATGGTCTCTGGTTTAATTCACTTTCTGTTTCAATTACTTACGGCCCTCTGCAAGGTGGTTGCAAACAATCTTTTTTCCAAGGTAGAGCAACGTGTTGTTATGCTTATTCATACAACGGTCCTCGTGCTTGTAAAGGTGTTTATTCAGGTGAGTTAACACAATCTTTTGAATGTGGGTTGCTTGTTTATATTACTAAGAGCGATGGCTCTCGTATACAAACAGCAACAAAAGCACCTGTAGTAACCACAAACTTTTATAATAACATCACTTTGGATAAGTGTGTTGAGTATAATATATATGGCAGAGTAGGCCAAGGTTTTATAACTAATGTAACTGACTCAGCTTTTGGTTATAATTATTTGCAAGATGGTGGGTTAGCTATCTTAGATACATCTGGTGCCATAGACATCTTTGTCGTAAAAGGTGTATATGGTCTTAATTATTATAAGGTTAACCCTTGTGAAGATGTTAACCAGCAGTTTGTAGTGTCAGGCGGCACATTAGTAGGTGTGCTCACTTCACGTAATGAAACTGGTTCTCAGTTTTTAGAAAACCAGTTTTACATTAAGCTCACTAATGGAACACATCGTTCTAGACGTTCTGTTAATGAAAATGTTACAAGTTGCCCGTATGTTAGTTATGGCAAGTTTTGTATAAAACCTGATGGTTCAACTTCTGTAATAGTACCAAAAGAACTGGAACAGTTTGTGACACCTTTACTTAATGCTACTGAATATGTGCCCATACCTGATAGTTTCAATTTGACTGTCACAGATGAGTACATACAAACACGTATGGATAAAGTTCAAATTAACTGCCTTCAATATGTCTGTGGCAATTCCTTTGAGTGTAGAAATTTGTTTCAGCAATATGGACCTGTTTGTGACAACATATTGTCGATAGTGAATAGTGTTAGTCAAAAAGAAGATATGGAACTTTTAACTTTCTACTCTTCTACTAAACCATTTGGTTTTAATACACCAATTCTTAGTAATCTTAGCACTGGCGATTTTAATATTTCTCTTTTGTTGACACCTCCTAGTAGTACTACTGGGCGCTCTTTTATTGAAGATCTTTTATTTACAAGTGTTGAATCTGTAGGATTACCAACAGATGACGCATACAAAAAGTGCACTGCAGGACCTCTAGGTTTTCTTAAAGACCTTGCATGTGCTCGTGAATATAATGGTTTGCTTGTGTTGCCTCCTATTATAACAGCAGAAATGCAAACTATGTATACTAGTTCTCTAGTAGCTTCTATGGCTCTTGGTGGTATTACTGCAGCTGGTGCTATACCTTTTGCCACACAACTGCAGGCCAGAATTAATCACTTGGGTATCACCCAGGCAGTCTTGTTGAAGAACCAAGAAAAAATTGCTGCTTCCTTTAATAAGGCCATTGGCCAAATGCAGGAAGGTTTTAGGAGTACATCTCTAGCATTACAACAAATTCAAGATGTTGTTAATAAGCAGAGTGCTATTCTTACTGAGACTATGGCATCACTTAATAAAAATTTTGGTGCTATTTCTTCTGTGATTCAAGACATTTACCAGCAACTTGATGTTATACAAGCAGACGCTCAAGTGGATCGACTTATAACTGGTAGATTGTCATCACTCTCTGTCTTAGCATCTGCTAAGCAGTCGGAGCACATTATAGCATCACAACAACGTGAGTTAGCTACTCAGAAAATTAATGAGTGTGTTAAATCACAGTCTACTAGGTACTCTTTTTGTGGTAATGGAAGACATGTTCTAACCATACCGCAAAATGCACCTAATGGTATAGTGTTTATACACTTTACTTATACTCCAGAGAGTTTTGTTAATGTTACTGCAATAGTGGGTTTTTGTGTAAAGCCTGCTAATGCTAGTCAGTATGCAATAGTGCCTGCTAATGGTAGAGGTATTTTTATACAATTTAATGGTAGTTACTACATCACTGCACGAGATATGTATATGCCAAGAAATATTACTGCAGGAGATATAGTTACGCTTACTTCTTGTCAATCAAATTATGTAAGTGTAAATAAGACCGTCATTACTACATTTGTAGACAATGATGATTTTGATTTTGATGACGAATTGTCAAAATGGTGGAATGATACTAAGCATGAGCTACCAGACTTTGACGAATTCAATTACACAGCACCTATACTTGACATTGATAGTGAAATTGATCGTATTCAAGGCGTTATACAGGGCCTTAATGACTCTCTAATAGACCTTGAAACACTATCAATACTCAAAACTTATATTAAGTGGCCTTGGTATGTGTGGTTAGCCATAGCTTTTGCCACTATTATCTTCATCCTAATATTAGGGTGGGTGTTTTTCATGACTGGTTGTTGTGGTTGTTGTTGTGGATGCTTTGGCATTATTCCTCTAATGAGCAAGTGTGGTAAGAAATCTTCTTATTACACGACTTTTGATAATGATGTGGTAACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MSVLLPLLVTLLCALCSAVLYDINSYVYYYQSAFRPSNGWHLYGGAYAVVNVSNENNNAGSASTCTAGAIGYSKNFSAASIAMTAPPSGMAWSTAAFCTAHCNFTNIVVFVTHCYKSGSGSCPLTGFIQSGYIRISAMKKECSGPSCLFYNLTESVSKYPTFRSLQCVNNYTSVYLNGDLVFTSNYTQDVVAAGVHFKSGGPITYKVMREVKALAYFVNGTAQDVILCDDTPRGLLACQYNTGNFSDGFYPFTNTSIVKDKFIVYRESSVNTTLTLTNFTFSNESGAPPNTGGVNSFILYQTQTAQSGYYNFNFSFLSGFVYEESNYMYGSYHPLCSFRPENINNGLWFNSLSVSITYGPLQGGCKQSFFQGRATCCYAYSYNGPRACKGVYSGELTQSFECGLLVYITKSDGSRIQTATKAPVVTTNFYNNITLDKCVEYNIYGRVGQGFITNVTDSAFGYNYLQDGGLAILDTSGAIDIFVVKGVYGLNYYKVNPCEDVNQQFVVSGGTLVGVLTSRNETGSQFLENQFYIKLTNGTHRSRRSVNENVTSCPYVSYGKFCIKPDGSTSVIVPKELEQFVTPLLNATEYVPIPDSFNLTVTDEYIQTRMDKVQINCLQYVCGNSFECRNLFQQYGPVCDNILSIVNSVSQKEDMELLTFYSSTKPFGFNTPILSNLSTGDFNISLLLTPPSSTTGRSFIEDLLFTSVESVGLPTDDAYKKCTAGPLGFLKDLACAREYNGLLVLPPIITAEMQTMYTSSLVASMALGGITAAGAIPFATQLQARINHLGITQAVLLKNQEKIAASFNKAIGQMQEGFRSTSLALQQIQDVVNKQSAILTETMASLNKNFGAISSVIQDIYQQLDVIQADAQVDRLITGRLSSLSVLASAKQSEHIIASQQRELATQKINECVKSQSTRYSFCGNGRHVLTIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVKPANASQYAIVPANGRGIFIQFNGSYYITARDMYMPRNITAGDIVTLTSCQSNYVSVNKTVITTFVDNDDFDFDDELSKWWNDTKHELPDFDEFNYTAPILDIDSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAIAFATIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1717     Identity=83.08%     Cov(Q)=90.50%     Cov(P)=95.75%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1169
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
49.9612499999998
Exp number, first 60 AAs:
15.86687
Total prob of N-in:
0.64527
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  1100
TMhelix
1101  -  1123
inside
1124  -  1169
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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