Strain
Bat_DQ022305
(Region: China: Hong Kong; Strain: Bat SARS coronavirus HKU3-1, complete genome.; Date: 17/02/2005)
Gene
hypothetical protein orf7a
Description
Annotated in NCBI,
hypothetical protein orf7a
Location
GenBank Accession
Full name
SARS_X4 domain-containing protein
Sequence
CDS
ATGAAAATTATTCTCTTCTTGACATTGATAGCGCTTGCAACTTGTGAGTTATATCATTATCAGGAGTGTGTTAGGGGTACGACTGTACTACTAAAAGAACCTTGCCCATCAGGAACATATGAGGGCAATTCACCATTTCACCCTCTTGCTGATAATAAATTTGCACTAACTTGCTCTAGCACACATTTTGCTTTTGCTTGTGCTGACGGTACTAGACACACCTATCAGCTTCGTGCAAGATCAGTTTCACCAAAACTTTTCATCAGACAAGAGGAAGTTTATCAAGAGCTCTACTCACCACTTTTCCTCATTGTTGCTGCATTAGTATTTATAATACTTTGCTTCACCATTAAGAGAAAGACAGAATGA
Protein
MKIILFLTLIALATCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCSSTHFAFACADGTRHTYQLRARSVSPKLFIRQEEVYQELYSPLFLIVAALVFIILCFTIKRKTE
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF08779
SARS_X4
SUPFAM
SSF117066
SSF117066
Gene 3D
ProteinModelPortal
PDB
1YO4
E-value=6e-58 Score= 173 Identity=97.62%
Cov(Q)=68.85% Cov(P)=96.55%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
122
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.98671
Exp number, first 60 AAs:
0.89036
Total prob of N-in:
0.07402
outside
1 - 92
TMhelix
93 - 115
inside
116 - 122
