Strain

Bat_DQ084200 (Region: China: Hong Kong; Strain: bat SARS coronavirus HKU3-3, complete genome.; Date: 17/03/2005)

Gene

hypothetical protein

Description

Annotated in NCBI, hypothetical protein

Location

DQ084200(+):27197-27565

GenBank Accession

AAZ41345.1

Full name

SARS_X4 domain-containing protein

Sequence

CDS

ATGAAAATTATTCTCTTCTTGACATTGATAGCGCTTGCAACTTGTGAGTTATATCATTATCAGGAGTGTGTTAGGGGTACGACTGTACTACTAAAAGAACCTTGCCCATCAGGAACATATGAGGGCAATTCACCATTTCACCCTCTTGCTGATAATAAATTTGCACTAACTTGCTCTAGCACACATTTTGCTTTTGCTTGTGCTGACGGTACTAGACACACCTATCAGCTTCGTGCAAGATCAGTTTCACCAAAACTTTTCATCAGACAAGAGGAAGTTTATCAAGAGCTCTACTCACCACTTTTCCTCATTGTTGCTGCATTAGTATTTATAATACTTTGCTTCACCATTAAGAGAAAGACAGAATGA

Protein

MKIILFLTLIALATCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCSSTHFAFACADGTRHTYQLRARSVSPKLFIRQEEVYQELYSPLFLIVAALVFIILCFTIKRKTE

Summary

Uniprot

D5HJZ6

Pubmed

20071579

EMBL

GQ153547 ADE34817.1

Proteomes

UP000144982

Pfam

PF08779 SARS_X4

Interpro

IPR014888 SARS_X4
IPR036495 SARS_X4_sf

SUPFAM

SSF117066 SSF117066

Gene 3D

2.60.40.1550

ProteinModelPortal

D5HJZ6

PDB

1YO4 E-value=6e-58 Score= 173 Identity=97.62% Cov(Q)=68.85% Cov(P)=96.55%

3D Structure

View Sequence and Structure Alignments

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:

122

Number of predicted TMHs:

Exp number of AAs in TMHs:

21.98671

Exp number, first 60 AAs:

0.89036

Total prob of N-in:

0.07402

outside

1 - 92

TMhelix

93 - 115

inside

116 - 122