Strain
Porcine_DQ811785
(Region: USAOhio; Strain: Alphacoronavirus 1; Date: )
Gene
replicase 1b
Description
Annotated in NCBI,
replicase 1b
Location
GenBank Accession
Sequence
CDS
AAGTTATTTAAACGAGTGCGGGGTTCTAGTGCAGCTCGACTAGAACCCTGCAATGGTACTGATCCAGACCATGTTAGTAGAGCTTTTGACATCTACAACAAAGATGTTGCGTGTATTGGTAAATTCCTTAAGACGAATTGTTCAAGATTTAGGAATTTGGACAAACATGACGCCTACTACATTGTCAAACGTTGTACAAAGACCGTTATGGACCATGAGCAAGTCTGTTATAACGATCTTAAAGATTCTGGTGCTGTTGCTGAGCATGACTTCTTTACATATAAAGAGGGTAGATGTGAGTTCGGTAATGTTGCACGTAGGAATCTTACAAAGTACACAATGATGGATCTTTGTTACGCTATCAGAAATTTTGATGAAAAGAACTGTGAAGTTCTCAAAGAAATACTCGTGACAGTAGGTGCCTGCACTGAAGAATTCTTTGAAAATAAAGATTGGTTTGATCCAGTTGAAAATGAAGCCATACATGAAGTTTATGCAAAACTTGGACCCATTGTAGCCAATGCTATGCTTAAATGTGTTGCTTTTTGCGATGCGATAGTGGAAAAAGGCTATATAGGTGTTATAACACTTGACAACCAAGATCTTAATGGCAATTTCTACGATTTCGGAGACTTCGTGAAGACTGCTCCAGGTTTTGGTTGCGCTTGTGTTACATCATATTATTCTTATATGATGCCTTTAATGGGGATGACTTCATGCTTAGAGTCTGAAAACTTTGTGAAAAGTGACATCTATGGTTCTGATTATAAGCAGTATGATTTACTAGCTTATGATTTTACCGAACATAAGGAGCACCTTTTCCAAAAATACTTTAAGTACTGGGATCGCACATATCACCCAAATTGTTCTGATTGTACTAGTGACGAGTGTATTATTCATTGTGCTAATTTTAACACATTGTTTTCTATGACAATACCAATGACAGCTTTTGGACCACTTGTCCGTAAAGTTCATATTGATGGTGTACCAGTAGTTGTTACTGCAGGTTACCATTTCAAACAACTTGGTATAGTATGGAATCTTGATGTAAAATTAGACACGATGAAGTTGAGTATGACTGATCTTCTTAGATTTGTCACAGATCCAACACTTCTTGTAGCATCAAGCCCTGCACTTTTAGACCAGCGTACTGTCTGTTTCTCCATTGCAGCTTTGAGTACTGGTATTACATATCAGACAGTAAAACCAGGTCACTTTAACAAAGATTTCTACGATTTCATAACAGAGCGTGGATTCTTTGAAGAGGGATCTGAGTTAACATTAAAACACTTTTTCTTCGCACAGGGTGGTGAAGCTGCTATGACAGACTTCAATTATTATCGCTACAATAGAGTCACAGTACTTGATATTTGCCACGCTCAATTTGTTTACAAAATAGTTGGCAAATATTTTGAATGTTATGACGGTGGGTGCATTAGTGCTCGCGAAGTTGTTGTTACAAACTATGATAAGAGTGCTGGCTATCCTTTGAACAAATTTGGTAAAGCTAGACTTTACTACGAAACTCTTTCATATGAAGAGCAGGATGCACTTTTTGCTTTAACAAAGAGAAATGTTTTACCCACAATGACTCAAATGAATTTGAAATACGCTATTTCTGGTAAGGCAAGAGCTCGTACAGTAGGAGGAGTTTCACTTCTTTCTACCATGACTACGAGACAATACCATCAGAAGCATTTGAAGTCAATTGCTGCAACACGCAATGCTACTGTGGTTATTGGTTCAACCAAGTTTTATGGTGGTTGGGACAATATGCTTAAAAATTTAATGCGTGACGTTGATAATGGTTGTTTGATGGGATGGGACTATCCTAAGTGTGACCGTGCTTTACCTAATATGATTAGAATGGCTTCTGCCATGATATTAGGTTCTAAGCATGTTGGTTGTTGTACACATAATGATAGGTTCTACCGCCTCTCCAATGAGTTAGCGCAAGTACTCACAGAAGTTGTGCATTGCACAGGTGGTTTTTATTTTAAACCTGGTGGTACAACTAGCGGTGATGGTACTACAGCATATGCTAACTCTGCTTTTAACATCTTTCAAGCTGTTTCTGCTAATGTTAATAAGCTTTTGGGAGTTGATTCAAACGCTTGTAACAACGTTACAGTAAAATCCATACAACGTAAAGTTTACGATAATTGTTATCGTAGTAGCAGCATTGATGAAGAATTTGTTGTTGAGTACTTTAGTTATTTGAGAAAACACTTTTCTATGATGATTTTATCTGATGATGGAGTTGTGTGCTACAACAAAGATTATGCGGATTTAGGTTATGTAGCTGACATTAATGCCTTTAAAGCAACACTTTATTACCAGAATAACGTCTTTATGTCCACTTCTAAGTGTTGGGTAGAACCAGATCTTAGTGTTGGACCACATGAATTTTGTTCACAGCATACATTGCAGATTGTTGGACCTGATGGAGACTATTATCTTCCCTATCCAGACCCGTCCAGAATTTTGTCAGCTGGTGTGTTTGTTGATGACATAGTTAAAACAGACAATGTTATTATGTTAGAACGTTACGTGTCATTGGCTATTGACGCATACCCACTTACAAAACACCCTAAGCCTGCTTATCAGAAAGTGTTTTATACTCTACTAGATTGGGTTAAACATTTACAGAAAAATTTGAATGCAGGTGTTCTTGATTCTTTTTCAGTGACAATGTTAGAGGAAGGTCAAGATAAGTTCTGGAGTGAAGAGTTTTACGCTAGCCTCTATGAAAAATCCACTGTCTTGCAAGCTGCAGGCATGTGTGTAGTATGTGGTTCGCAAACTGTACTTCGTTGTGGAGACTGTCTTAGGAGACCACTTTTATGCACGAAATGTGCTTACGACCATGTTATGGGAACAAAGCATAAATTCATTATGTCTATCACACCATATGTGTGTAGTTTTAATGGTTGTAATGTCAATGATGTTACAAAGTTGTTTTTAGGTGGTCTTAGTTATTATTGTATGAACCACAAACCACAGTTGTCATTCCCACTCTGTGCTAATGGCAACGTTTTTGGTCTATATAAAAGTAGTGCGGTCGGTTCAGAGGCTGTTGAAGATTTCAACAAACTCGCAGTTTCTGACTGGACTAATGTAGAAGACTACAAACTTGCAAACAATGTCAAGGAATCTCTGAAAATTTTCGCTGCTGAAACTGTGAAAGCTAAGGAGGAGTCTGTTAAATCTGAATATGCTTATGCTGTATTAAAGGAGGTTATCGGCCCTAAGGAAATTGTACTCCAATGGGAAGCTTCTAAGACTAAGCCTCCACTTAATAGAAATTCAGTTTTCACGTGTTTTCAGATAAGTAAGGATACTAAAATTCAATTAGGTGAATTTGTGTTTGAGCAATCTGAGTACGGTAGTGATTCTGTTTATTACAAGAGCACGAGTACTTATAAATTGACACCAGGTATGATCTTTGTGTTGACTTCTCATAATGTGAGTCCTCTTAAAGCTCCAATTTTAGTCAACCAAGAAAAGTACAATACCATATCTAAGCTCTATCCTGTCTTTAATATAGCGGAAGCCTATAATACACTGGTTCCTTACTACCAAATGATAGGTAAGCAAAAATTTACAACTATCCAAGGCCCTCCTGGTAGCGGTAAATCTCATTGTGTTATAGGTTTGGGTTTGTATTACCCTCAGGCTAGAATAGTCTACACTGCATGTTCTCATGCGGCTGTAGACGCTTTATGTGAAAAAGCAGCCAAAAACTTCAATGTTGATAGATGTTCAAGGATAATACCTCAAAGAATCAGAGTTGATTGTTACACTGGCTTCAAGCCTAATAACACCAATGCGCAGTACTTGTTTTGTACTGTCAATGCTCTACCAGAAGTAAGTTGTGACATTGTTGTAGTTGATGAGGTCTCTATGTGTACTAATTATGATCTTAGTGTCATAAATAGCCGACTGAGTTACAAACACATTGTTTATGTTGGAGACCCACAGCAGCTACCAGCTCCTAGAACTTTGATTAATAAGGGTGTACTTCAACCGCAGGATTACAATGTTGTAACCAAAAGAATGTGCACACTAGGACCTGATGTCTTTTTGCATAAATGTTACAGGTGCCCAGCCGAAATTGTTAAGACAGTCTCTGCACTTGTTTATGAAAATAAATTTGTACCTGTCAACCCAGAATCAAAGCAGTGCTTCAAAATGTTTGTAAAAGGTCAGGTTCAGATTGAGTCTAACTCTTCTATAAACAACAAGCAACTAGAGGTTGTCAAGGCCTTTTTAGCACATAATCCAAAATGGCGTAAAGCTGTTTTCATCTCACCCTATAATAGTCAAAATTATGTTGCTCGGCGTCTACTTGGTTTGCAAACGCAAACCGTGGATTCCGCCCAGGGTAGTGAGTATGATTACGTCATCTACACACAGACCTCCGATACACAGCATTCTACTAATGTTAACAGATTTAATGTTGCCATTACGAGAGCAAAGGTTGGTATACTTTGTATCATGTGTGATAGAACTATGTATGAGAATCTTGATTTCTATGAACTCAAAGATTCAAAGATTGGTTTACAAGCGAAACCTGAAACTTGTGGTTTATTTAAAGATTGTTCGAAGAGCGAACAATACATACCACCTGCTTATGCAACGACATATATGAGCTTATCTGATAATTTTAAGACAAGTGATGGTTTAGCTGTTAACATCGGTACAAAAGATGTTAAATATGCTAATGTCATCTCATATATGGGATTCAGGTTTGAAGCCAACATACCAGGCTATCACACACTATTCTGCACGCGAGATTTTGCTATGCGTAATGTTAGAGCATGGCTTGGGTTTGACGTTGAAGGTGCACATGTCTGTGGTGATAATGTTGGAACTAATGTACCATTACAGCTGGGTTTCTCAAACGGTGTGGATTTTGTAGTGCAAACTGAAGGATGTGTTATTACTGAAAAAGGTAATAGCATTGAGGTTGTAAAAGCACGAGCACCACCAGGTGAGCAATTTGCACACTTGATTCCGCTTATGAGAAAGGGTCAACCTTGGCACATTGTTAGACGCCGTATAGTGCAGATGGTCTGTGACTATTTTGATGGCTTATCAGACATTCTGATCTTTGTGCTTTGGGCTGGTGGTCTTGAACTTACAACTATGAGGTACTTTGTTAAAATTGGAAGACCACAAAAATGTGAATGCGGCAAAAGTGCAACTTGTTATAGTAGCTCTCAATCTGTTTATGCTTGCTTCAAGCATGCATTAGGATGTGATTATTTATATAACCCTTACTGCATTGACATACAGCAATGGGGCTACACAGGATCTTTGAGCATGAATCATCATGAAGTTTGCAACATTCATAGAAATGAGCATGTAGCTAGTGGTGATGCTATCATGACTAGATGTCTCGCTATACATGACTGTTTTGTCAAACGTGTTGATTGGTCAATTGTGTACCCTTTTATTGACAATGAAGAAAAGATCAATAAAGCTGGTCGCATAGTGCAGTCACATGTCATGAAAGCTGCTCTGAAGATTTTTAATCCTGCTGCAATTCACGATGTTGGTAATCCAAAAGGCATTCGTTGTGCTACAACACCAATACCATGGTTTTGTTATGATCGTGATCCTATTAATAACAATGTTAGATGTCTGGATTATGACTATATGGTACATGGTCAAATGAATGGTCTTATGTTATTTTGGAACTGTAATGTAGACATGTACCCAGAGTTTTCAATTGTTTGTAGATTTGATACTCGCACTCGCTCTAAATTGTCTTTAGAAGGTTGTAATGGTGGTGCATTGTATGTCAATAACCATGCTTTCCACACACCAGCTTATGATAGAAGAGCTTTTGCTAAGCTTAAACCTACGCCATTCTTTTACTATGATGATAGTAATTGTGAACTTGTTGATGGACAACCTAATTATGTACCACTTAAGTCAAATGTTTGCATAACAAAATGCAACATTGGTGGTGCTGTCTGCAAGAAGCATGCTGCTCTTTACAGAGCGTATGTTGAGGATTACAACATTTTTATGCAGGCTGGTTTTACAATATGGTGTCCTCAAAACTTTGACACCTATATGCTTTGGCATGGTTTTGTTAATAGCAAAGCACTTCAGAGTCTAGAAAATGTGGCTTTTAATGTCGTTAAGAAAGGTGCCTTCACCGGTTTAAAAGGTGACTTACCAACTGCTGTTATTGCTGACAAAATAATGGTAAGAGATGGACCTACTGACAGATGTATTTTTACAAATAAGACTAGTTTACCTACAAATGTAGCTTTTGAGTTATATGCAAAACGCAAACTTGGACTCACACCTCCATTAACAATACTTAGGAATTTAGGTGTTGTCGCAACATATAATTTTGTGTTGTGGGATTATGAAGCTGAACGTCCTTTCTCAAATTTCACTAAGCAAGTTTGTTCCTACACTGATCTTGATAGTGAAGTTGTAACATGTTTTGATAATAGTATTGCTGGTTCTTTTGAGCGTTTTACTACTACAAGAGATGCAGTGCTTATTTCTAATAACGCTGTGAAAGGGCTTAGTGCCATTAAATTACAATATGGCCTTTTGAATGATCTACCTGTAAGTACTGTTGGAAATAAACCTGTCACATGGTATATCTATGTGCGCAAGAATGGTGAGTACGTCGAACAAATCGATAGTTATTATACACAGGGACGTACCTTTGAAACCTTCAAACCTCGTAGTACAATGGAAGAAGATTTTCTTAGTATGGATACTACACTCTTCATCCAAAAGTATGGTCTCGAGGATTATGGTTTTGAACACGTTGTATTTGGAGATGTCTCTAAAACTACCATCGGTGGTATGCATCTTCTTATATCGCAAGTGCGCCTTGCAAAAATGGGTTTGTTTTCTGTTCAAGAATTTATGAATAATTCTGACAGTACACTGAAAAGTTGTTGTATTACATATGCTGATGATCCATCTTCTAAGAATGTGTGCACTTATATGGACATACTCTTGGACGATTTTGTGACTATCATTAAGAGCTTAGATCTTAATGTTGTGTCCAAAGTTGTGGATGTCATTGTAGATTGTAAGGCATGGAGATGGATGTTGTGGTGTGAGAATTCACATATTAAAACCTTCTATCCACAACTCCAATCTGCTGAATGGAACCCCGGTTATAGCATGCCTACACTGTACAAAATCCAGCGTATGTGTCTCGAACGGTGTAATCTCTACAATTATGGTGCACAAGTGAAATTACCTGATGGCATTACTACTAATGTCGTTAAGTATACTCAGTTGTGTCAATACCTTAACACTACTACATTGTGTGTACCACACAAAATGCGTGTATTGCATTTAGGAGCTGCTGGTGCATCTGGTGTTGCTCCTGGTAGTACTGTATTAAGAAGATGGTTACCAGATGATGCCATATTGGTTGATAATGATTTGAGAGATTACGTTTCCGACGCAGACTTCAGTGTTACAGGTGATTGTACTAGTCTTTACATTGAAGATAAGTTTGATTTGCTCGTTTCTGATTTATATGATGGCTCCACAAAATCAATTGACTGTGAAAACACGTCGAAAGATGGTTTCTTTACTTATATTAATGGTTTCATTAAAGAGAAACTGTCACTTGGTGGATCTGTTGCCATTAAAATCACGGAATTTAGTTGGAATAAAGATTTATATGAATTGATTCAAAGATTTGAGTATTGGACTGTGTTTTGTACAAGTGTTAACACGTCATCATCAGAAGGCTTTCTGATTGGTATTAACTACTTAGGACCATACTGTGACAAAGCAATAGTAGATGGAAATATAATGCATGCCAATTATATATTTTGGAGAAACTCTACAATTATGGCTCTATCACATAACTCAGTCCTAGACACTCCTAAATTCAAGTGTCGTTGTAACAACGCACTTATTGTTAATTTAAAAGAAAAAGAATTGAATGAAATGGTCATTGGATTACTAAGGAAGGGTAAGTTGCTCATTAGAAATAATGGTAAGTTACTAAACTTTGGTAACCACTTCGTTAACACACCATGA
Protein
KLFKRVRGSSAARLEPCNGTDPDHVSRAFDIYNKDVACIGKFLKTNCSRFRNLDKHDAYYIVKRCTKTVMDHEQVCYNDLKDSGAVAEHDFFTYKEGRCEFGNVARRNLTKYTMMDLCYAIRNFDEKNCEVLKEILVTVGACTEEFFENKDWFDPVENEAIHEVYAKLGPIVANAMLKCVAFCDAIVEKGYIGVITLDNQDLNGNFYDFGDFVKTAPGFGCACVTSYYSYMMPLMGMTSCLESENFVKSDIYGSDYKQYDLLAYDFTEHKEHLFQKYFKYWDRTYHPNCSDCTSDECIIHCANFNTLFSMTIPMTAFGPLVRKVHIDGVPVVVTAGYHFKQLGIVWNLDVKLDTMKLSMTDLLRFVTDPTLLVASSPALLDQRTVCFSIAALSTGITYQTVKPGHFNKDFYDFITERGFFEEGSELTLKHFFFAQGGEAAMTDFNYYRYNRVTVLDICHAQFVYKIVGKYFECYDGGCISAREVVVTNYDKSAGYPLNKFGKARLYYETLSYEEQDALFALTKRNVLPTMTQMNLKYAISGKARARTVGGVSLLSTMTTRQYHQKHLKSIAATRNATVVIGSTKFYGGWDNMLKNLMRDVDNGCLMGWDYPKCDRALPNMIRMASAMILGSKHVGCCTHNDRFYRLSNELAQVLTEVVHCTGGFYFKPGGTTSGDGTTAYANSAFNIFQAVSANVNKLLGVDSNACNNVTVKSIQRKVYDNCYRSSSIDEEFVVEYFSYLRKHFSMMILSDDGVVCYNKDYADLGYVADINAFKATLYYQNNVFMSTSKCWVEPDLSVGPHEFCSQHTLQIVGPDGDYYLPYPDPSRILSAGVFVDDIVKTDNVIMLERYVSLAIDAYPLTKHPKPAYQKVFYTLLDWVKHLQKNLNAGVLDSFSVTMLEEGQDKFWSEEFYASLYEKSTVLQAAGMCVVCGSQTVLRCGDCLRRPLLCTKCAYDHVMGTKHKFIMSITPYVCSFNGCNVNDVTKLFLGGLSYYCMNHKPQLSFPLCANGNVFGLYKSSAVGSEAVEDFNKLAVSDWTNVEDYKLANNVKESLKIFAAETVKAKEESVKSEYAYAVLKEVIGPKEIVLQWEASKTKPPLNRNSVFTCFQISKDTKIQLGEFVFEQSEYGSDSVYYKSTSTYKLTPGMIFVLTSHNVSPLKAPILVNQEKYNTISKLYPVFNIAEAYNTLVPYYQMIGKQKFTTIQGPPGSGKSHCVIGLGLYYPQARIVYTACSHAAVDALCEKAAKNFNVDRCSRIIPQRIRVDCYTGFKPNNTNAQYLFCTVNALPEVSCDIVVVDEVSMCTNYDLSVINSRLSYKHIVYVGDPQQLPAPRTLINKGVLQPQDYNVVTKRMCTLGPDVFLHKCYRCPAEIVKTVSALVYENKFVPVNPESKQCFKMFVKGQVQIESNSSINNKQLEVVKAFLAHNPKWRKAVFISPYNSQNYVARRLLGLQTQTVDSAQGSEYDYVIYTQTSDTQHSTNVNRFNVAITRAKVGILCIMCDRTMYENLDFYELKDSKIGLQAKPETCGLFKDCSKSEQYIPPAYATTYMSLSDNFKTSDGLAVNIGTKDVKYANVISYMGFRFEANIPGYHTLFCTRDFAMRNVRAWLGFDVEGAHVCGDNVGTNVPLQLGFSNGVDFVVQTEGCVITEKGNSIEVVKARAPPGEQFAHLIPLMRKGQPWHIVRRRIVQMVCDYFDGLSDILIFVLWAGGLELTTMRYFVKIGRPQKCECGKSATCYSSSQSVYACFKHALGCDYLYNPYCIDIQQWGYTGSLSMNHHEVCNIHRNEHVASGDAIMTRCLAIHDCFVKRVDWSIVYPFIDNEEKINKAGRIVQSHVMKAALKIFNPAAIHDVGNPKGIRCATTPIPWFCYDRDPINNNVRCLDYDYMVHGQMNGLMLFWNCNVDMYPEFSIVCRFDTRTRSKLSLEGCNGGALYVNNHAFHTPAYDRRAFAKLKPTPFFYYDDSNCELVDGQPNYVPLKSNVCITKCNIGGAVCKKHAALYRAYVEDYNIFMQAGFTIWCPQNFDTYMLWHGFVNSKALQSLENVAFNVVKKGAFTGLKGDLPTAVIADKIMVRDGPTDRCIFTNKTSLPTNVAFELYAKRKLGLTPPLTILRNLGVVATYNFVLWDYEAERPFSNFTKQVCSYTDLDSEVVTCFDNSIAGSFERFTTTRDAVLISNNAVKGLSAIKLQYGLLNDLPVSTVGNKPVTWYIYVRKNGEYVEQIDSYYTQGRTFETFKPRSTMEEDFLSMDTTLFIQKYGLEDYGFEHVVFGDVSKTTIGGMHLLISQVRLAKMGLFSVQEFMNNSDSTLKSCCITYADDPSSKNVCTYMDILLDDFVTIIKSLDLNVVSKVVDVIVDCKAWRWMLWCENSHIKTFYPQLQSAEWNPGYSMPTLYKIQRMCLERCNLYNYGAQVKLPDGITTNVVKYTQLCQYLNTTTLCVPHKMRVLHLGAAGASGVAPGSTVLRRWLPDDAILVDNDLRDYVSDADFSVTGDCTSLYIEDKFDLLVSDLYDGSTKSIDCENTSKDGFFTYINGFIKEKLSLGGSVAIKITEFSWNKDLYELIQRFEYWTVFCTSVNTSSSEGFLIGINYLGPYCDKAIVDGNIMHANYIFWRNSTIMALSHNSVLDTPKFKCRCNNALIVNLKEKELNEMVIGLLRKGKLLIRNNGKLLNFGNHFVNTP
Summary
Catalytic Activity
ATP + H2O = ADP + H(+) + phosphate
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)
Similarity
Belongs to the coronaviruses polyprotein 1ab family.
Uniprot
EMBL
Proteomes
Pfam
Interpro
IPR002589
Macro_dom
IPR036499 NSP9_sf
IPR009461 Coronavirus_NSP16
IPR036333 NSP10_sf
IPR038123 NSP4_C_sf
IPR037230 NSP8_sf
IPR038634 A-CoV_nsp1_sf
IPR042515 Nsp15_N
IPR027417 P-loop_NTPase
IPR032039 A-CoV_nsp1
IPR041679 DNA2/NAM7-like_AAA
IPR037204 NSP7_sf
IPR008740 Peptidase_C30
IPR014827 Viral_protease
IPR013016 Peptidase_C30/C16
IPR014822 NSP9
IPR009466 NSP11
IPR009003 Peptidase_S1_PA
IPR018995 RNA_synth_NSP10_coronavirus
IPR029063 SAM-dependent_MTases
IPR014828 NSP7
IPR027351 (+)RNA_virus_helicase_core_dom
IPR014829 NSP8
IPR037227 EndoU-like
IPR027352 CV_ZBD
IPR009469 RNA_pol_N_coronovir
IPR032505 Corona_NSP4_C
IPR036499 NSP9_sf
IPR009461 Coronavirus_NSP16
IPR036333 NSP10_sf
IPR038123 NSP4_C_sf
IPR037230 NSP8_sf
IPR038634 A-CoV_nsp1_sf
IPR042515 Nsp15_N
IPR027417 P-loop_NTPase
IPR032039 A-CoV_nsp1
IPR041679 DNA2/NAM7-like_AAA
IPR037204 NSP7_sf
IPR008740 Peptidase_C30
IPR014827 Viral_protease
IPR013016 Peptidase_C30/C16
IPR014822 NSP9
IPR009466 NSP11
IPR009003 Peptidase_S1_PA
IPR018995 RNA_synth_NSP10_coronavirus
IPR029063 SAM-dependent_MTases
IPR014828 NSP7
IPR027351 (+)RNA_virus_helicase_core_dom
IPR014829 NSP8
IPR037227 EndoU-like
IPR027352 CV_ZBD
IPR009469 RNA_pol_N_coronovir
IPR032505 Corona_NSP4_C
SUPFAM
ProteinModelPortal
PDB
6M71
E-value=0.0 Score=1123 Identity=58.90%
Cov(Q)=34.59% Cov(P)=98.41%
3D Structure
Ontologies
GO
GO:0006351 P:transcription, DNA-templated
GO:0003724 F:RNA helicase activity
GO:0019082 P:viral protein processing
GO:0008270 F:zinc ion binding
GO:0033644 C:host cell membrane
GO:0039520 P:induction by virus of host autophagy
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0005524 F:ATP binding
GO:0004197 F:cysteine-type endopeptidase activity
GO:0008168 F:methyltransferase activity
GO:0016021 C:integral component of membrane
GO:0008242 F:omega peptidase activity
GO:0003723 F:RNA binding
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0016896 F:exoribonuclease activity, producing 5'-phosphomonoesters
GO:0019079 P:viral genome replication
GO:0003724 F:RNA helicase activity
GO:0019082 P:viral protein processing
GO:0008270 F:zinc ion binding
GO:0033644 C:host cell membrane
GO:0039520 P:induction by virus of host autophagy
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0005524 F:ATP binding
GO:0004197 F:cysteine-type endopeptidase activity
GO:0008168 F:methyltransferase activity
GO:0016021 C:integral component of membrane
GO:0008242 F:omega peptidase activity
GO:0003723 F:RNA binding
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0016896 F:exoribonuclease activity, producing 5'-phosphomonoesters
GO:0019079 P:viral genome replication
Subcellular Location
From MSLVP
From Uniprot
Host cytoplasm
Host perinuclear region
Host membrane
Host perinuclear region
Host membrane
Topology
Length:
2680
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.22001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00781
outside
1 - 2680
