CoVDB Coronavirus Database (v3)   
Strain
Fish_DQ898157 (Region: Germany;  Strain: White bream virus strain DF24/00, complete genome.;  Date: )
Gene
putative spike protein
Description
Annotated in NCBI,  putative spike protein
GenBank Accession
 

Sequence

CDS
ATGTGGCTAATCACCATTCTTGCCACAATCTCCTGCGTCACAGCGCAACTCTCACAAACCAACCCAGATTGTCCAATTCCAACATGCACAATCCTCCCACCACCAAAAACCACACTGGACAACACAAAATTTCGTGTTGTCTACACAAAGGACCAAGAAGCCCTTATTTATGCAACAAACTTCACCAGTCCATTTAACAATGCACAATACCCACTGCCCACATTAGGTAATCATCTAAATAGGTCGTACACACTCAACTATGACAAAGTCTTCCTTAACATCGCTGACTCACCAGATATGTTAAACTTGAAAACAAGCTGGACTGTTGTTAATAATTCCAACCTTTGTCCTTTGTCTCCATCTGTGTACAGGTCAACTTCACCATTACAAACGTTAACAACAGCCGAACAATACTGCTTCATGACAACTGCAACTCTAACATCAGCCTTTCTGTATGATTATACAGCCATGAAACCAGTCGGTTACATCAGAGCGCGTGCTGAAGAAACTATTAGCTTCTTTAGTATCATGAAAACCAATATGGTGAACAGACCTACTAGTCCATCCCTTTCACAAGCACACACACACACACTAGCAGCCATGCGAACAACAGCAACAGGCATACAAGCCCAAACATTTAAACCACAAACAGGATTCTTCATCGTTCTAGACGCTTCAAGAGCACGTGCAGTTACAAATCCTCTTGACACCGCCATCCAACCTAAATTCTCACCATCATTCATTAAGGAAGTCACATTCGACCACATCTTTCAAACTACAATCAATGAAACTGCACGCAGTGTAACCAGAGAAACAACAACTGGATACATCATGAATGCCGCTAAAACTGGTGCATTGTACAAAGCTTCACCTGCATACTACCTTTTTCTCATCTCATCAGACTGCCGCTTACAACAAGCCTTATCGGTGCCCTACGATTTTAGTTTGGGCCGCTTTTGCCCTGCTTCAATGTCTTGCTGTTTAAATAAAGGTTATGAACAGTACTATGTAAATACTTGGCTCTTCCACTACTACAACCTCAAACGCTTAAATGTACTAAACCTAGAATCATCACCTGTATCTGACCACTTTATACAACTACACCGCACATTCAACACAGAACATTCCATGCACTGCGACGGCTCACCATACGCATCAGACACAACATACAACATCGCCCTTCTACGTGACACAGTTCAATTTCTCAATGGCACCAAAACAACAACACCACTCGCAAATGAAATCCCACAACTCACAGACAGTCTTGGATACCTAAAATACCAACCAGACATGGTTGATGCATCTGACCATCAAAACTATATGGCCTATGTGACCTACCTAATGGCAATCTTCTACCCAACATTCACAGAAGCACAGAAATTTGAGTTCCACAATCTACTTCAATCTGTTTGCTATTTTGACAAAGGCTCAATTTCAAGAAATCAAGCCTACCATTCCATCTGCCATATCATCAGTTTCCAGACAACAGCTTCTGTACCATACCCCATTGAACTACAAATCCCATTTACAACAGAACCAACTAGCGGTTATAACGCATATCTAGTAAAAACACCAATTGGATCAGTTGCTATCGGAAATCAAAATCCTTTCGACGGCGAAGGTGTATGTTTTCTCACCACATGTATCTACCATCCAACCAAAAAGATCAACCAAAAGCTTACAATTCCACCTGTAAGATGGCAAGTTGTTCCAGAAGGTATTGCAGTTGTTACAGGTATTCCACCTAACTGTCTCGGTTATGAAACCTACACACAAGGATCCTCATTTTTTACAATTTACAATGACTCTAAACCATGTCAACCACAAACAATGCAAATTGCCCAAGCTCGCTCAGTCATTACAACAGTCTACAGCGCAGCACAGAAAAGTGATATTTTTGTACAACCATATGGTAAATCTTCATGGGTTAACGGTTCATACCAATTCGACCAATTTGTAGGTGGTGCTCTTAATCTCCGCACGCTTACATTCACAATGCGTAAGCCAACACAACTATATGTGCTTGACCCCATCGAAGGTACATATATCATTCCAGATTACCAAACCAAGTTTCCACTCCTCACATCAGGTACACAGACTTACTACTACGACCCAGACCAAACTGTCACAAACACAACAGAAGTCTCGAAAGTTACGATTGACTTTTCAATTCGAACCATGATCACATTAGACCCACTTGTCTTTAACTGTGAAGAATTCATCTGTGACAAAGATCCAACATGCCGTACACAATTCTCAAGCTACTGTCAGACAACACAACCTATTCTGGCAGCCCTCAAAGATGCATTTGAAAAGTACAACCGCTCCATTGCAGACTACACATCAACAATTCGCGCACTCACGAACACCACACAAGACCTCTTCGCATCAGCAACACCAGTAAGATACCGCCGTGGCGTTGAAGTTCCATTGGGTTACGGACATGATTTAGAACAACCCTCCTGGGTATATGATCTTGGTGGAACCGCCATAGTTCCTTGGATCGGTACAGCTGTAGCAGTTGGCAAACTTGCCAATCGTGTCGCATCTATTGAAGCCACACTATACCAGATCACTCAAGGCGTCAAGCAGTCAATTCAATCCACCAATGACAAGTTTGACAAAATCACAAACATTCTGCATACTCACTTACGTCCAGTAACAGAAGGTTTAGTCCGTACTAATGAGCAACTCAATGCATTCTCCAAACAAGTAAGAGATCAGTTCACAATGATTAACACCGTAACAACTGAACTCAGCGCATACGTAGACCAACTCCAACAAGTCTTTACCGTAGGTGCCTTTTACCAAAATCAGATCCTGCAAGTAATTTCACAACTCAACAGCTTGCAAGTATATGTAGATACCCTAACATCCAGTTTCACAGACTGCATTTCAGATTTAAACCAGAAAATCCTATCCCCAGCATGCATCACAACACATCAGCTTCTCCAAATCAACAAACCGTCTGATAACCTAGGACTCAAGAACGTACTCACCCATTACATCAACGGTTCAGCAGCAACATTCTATCATCTCACATCTACCAAAGGAGTTTACAAACCACTTCCCAAACTTTTTAACAACACCCATTTCCTTGCACCAACAACAGCTTACAACCCTGTGACAGGAACATGCTTCTTCTGCGGCAGCAATGCCTGCGATAAATCAGTAACAGTGGACTGTGATTACCAACCACAACCATTGCAGTCTACTATTCTCGCTGTTTATCCAACACCAACAGGTCTTGATTTACTTACAATAACATCAAACAAAACCTTCGAGATCAAGCATGGCTCAACAGTAGTCACTTCCGTCGCAATCCCGCCACCACCAATACTCTCCAGTACAATAAATATTAACGTCACATTCCAACAACAACTCCTCCAACTACAAGAACAAGTTGATCAGTTAAATCTACAGACAAATTACACCACAACAGAAATTCAATCCATTATTGACAAATACAATGTTGAAATTCAAAACGCTCTCAATCAAATTGTCGACTTCGGGCCAGGAACACCATCTCTTGCCTTGTGGAAAGTAATCTTAATCCTCATAGCAGTTGTCGTTGTAATTGTTATCATTGCAACAACAATCTTCTGTTCCGTTAGAAAGAACCAGTCTGAACTTCCACTTCAGGTACTGTCTCGCCTTCGCTAA
Protein
MWLITILATISCVTAQLSQTNPDCPIPTCTILPPPKTTLDNTKFRVVYTKDQEALIYATNFTSPFNNAQYPLPTLGNHLNRSYTLNYDKVFLNIADSPDMLNLKTSWTVVNNSNLCPLSPSVYRSTSPLQTLTTAEQYCFMTTATLTSAFLYDYTAMKPVGYIRARAEETISFFSIMKTNMVNRPTSPSLSQAHTHTLAAMRTTATGIQAQTFKPQTGFFIVLDASRARAVTNPLDTAIQPKFSPSFIKEVTFDHIFQTTINETARSVTRETTTGYIMNAAKTGALYKASPAYYLFLISSDCRLQQALSVPYDFSLGRFCPASMSCCLNKGYEQYYVNTWLFHYYNLKRLNVLNLESSPVSDHFIQLHRTFNTEHSMHCDGSPYASDTTYNIALLRDTVQFLNGTKTTTPLANEIPQLTDSLGYLKYQPDMVDASDHQNYMAYVTYLMAIFYPTFTEAQKFEFHNLLQSVCYFDKGSISRNQAYHSICHIISFQTTASVPYPIELQIPFTTEPTSGYNAYLVKTPIGSVAIGNQNPFDGEGVCFLTTCIYHPTKKINQKLTIPPVRWQVVPEGIAVVTGIPPNCLGYETYTQGSSFFTIYNDSKPCQPQTMQIAQARSVITTVYSAAQKSDIFVQPYGKSSWVNGSYQFDQFVGGALNLRTLTFTMRKPTQLYVLDPIEGTYIIPDYQTKFPLLTSGTQTYYYDPDQTVTNTTEVSKVTIDFSIRTMITLDPLVFNCEEFICDKDPTCRTQFSSYCQTTQPILAALKDAFEKYNRSIADYTSTIRALTNTTQDLFASATPVRYRRGVEVPLGYGHDLEQPSWVYDLGGTAIVPWIGTAVAVGKLANRVASIEATLYQITQGVKQSIQSTNDKFDKITNILHTHLRPVTEGLVRTNEQLNAFSKQVRDQFTMINTVTTELSAYVDQLQQVFTVGAFYQNQILQVISQLNSLQVYVDTLTSSFTDCISDLNQKILSPACITTHQLLQINKPSDNLGLKNVLTHYINGSAATFYHLTSTKGVYKPLPKLFNNTHFLAPTTAYNPVTGTCFFCGSNACDKSVTVDCDYQPQPLQSTILAVYPTPTGLDLLTITSNKTFEIKHGSTVVTSVAIPPPPILSSTININVTFQQQLLQLQEQVDQLNLQTNYTTTEIQSIIDKYNVEIQNALNQIVDFGPGTPSLALWKVILILIAVVVVIVIIATTIFCSVRKNQSELPLQVLSRLR

Summary

Uniprot
Pfam
PF01601   Corona_S2
PF01600   Corona_S1
Interpro
IPR002551   Corona_S1
IPR002552   Corona_S2
ProteinModelPortal

Ontologies

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
1220
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.81006
Exp number, first 60 AAs:
0.00827999999999999
Total prob of N-in:
0.00231
outside
1  -  1181
TMhelix
1182  -  1204
inside
1205  -  1220
 
 
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