Strain

Fish_DQ898157 (Region: Germany; Strain: White bream virus strain DF24/00, complete genome.; Date: )

Gene

putative nucleocapsid protein

Description

Annotated in NCBI, putative nucleocapsid protein

Location

DQ898157(+):25915-26400

GenBank Accession

ABI97397.1

Full name

Nucleoprotein

Alternative Name

Nucleocapsid protein

Sequence

CDS

ATGAGCGGAATGTACCCACAACCCCTCATGATGATGCCACAACAACAACGCCGACCTCGCAAACCACGCACCAAGTCTGCACCTAAACCACCAACAACTTCCAAAATGTCTGAAAAAACAAAGAAAGAAGTCACCAAATCTACCATGTCAACGGAAAAACAAATTCCAATGCCCACCATTCCAGCCGCCTCCAAAGGGTCTCTTAAAGACCTGGATGTGCGTAATAATTTAAACCAGCAGGAATTAAATGGTATCTACTATGACACAGTCAACAACTTGAATGCTTGTCATGGCAGAATGATCTTCCAACCCACTGGTGGAAGTCTTACAGAAGGCACATTAACAGTTACCATCAAACTGCGCGTCAAATCTGACCAATGCCTCAAAATGTGTTCAGCCTTCCACAAGAGAAACACCAATCTTGAAACTCCACTCAGTGCAGTAGACATCTCCAAAGAATCAGAGAAAAGTCTTGGAAAGGATTAA

Protein

MSGMYPQPLMMMPQQQRRPRKPRTKSAPKPPTTSKMSEKTKKEVTKSTMSTEKQIPMPTIPAASKGSLKDLDVRNNLNQQELNGIYYDTVNNLNACHGRMIFQPTGGSLTEGTLTVTIKLRVKSDQCLKMCSAFHKRNTNLETPLSAVDISKESEKSLGKD

Summary

Function

Major structural component of virions that associates with genomic RNA.

Similarity

Belongs to the torovirinae nucleoprotein family.

Keywords

Reference proteome Ribonucleoprotein RNA-binding Viral nucleoprotein Virion

Feature

chain Nucleoprotein

Uniprot

Q008X2

Pubmed

16987966

EMBL

DQ898157

Proteomes

UP000000680

ProteinModelPortal

Q008X2

Ontologies

KEGG

vg:4443111

GO:0019013 C:viral nucleocapsid
GO:0003723 F:RNA binding

Subcellular Location

From MSLVP

Host nucleus. Host cytoplasm.

From Uniprot

Virion Located inside the virion, complexed with the viral RNA. With evidence from 1 publications.

Topology

Length:

161

Number of predicted TMHs:

Exp number of AAs in TMHs:

0.006

Exp number, first 60 AAs:

Total prob of N-in:

0.03683

outside

1 - 161