CoVDB Coronavirus Database (v3)   
Strain
shrimp_EU487200 (Region: Thailand;  Strain: Yellow head virus, complete genome.;  Date: 1998)
Gene
replicase polyprotein 1a
Description
Annotated in NCBI,  replicase polyprotein 1a
Location
EU487200(+):72-12290
GenBank Accession
ACA21300.1
 

Sequence

CDS
ATGGAACCTTTTCAGGTTCTATCGTTGTTGGCAACATCCTTCAGTCTACTCCTATTGCTTAGGATCCTAGACCGCGGCACGACTGTTCTGTCTGCCGTCAGATTGACTCTCAGGACCACTTTCTTCAATGAAAGTGCACGACGCCCGCTCTATTGGACCAGCCCCGCCAAGTGGTTCAATTCGCTTGGCCAGACTACTCCCAGGATGGAAAACCGATCGATCAAGAGTGTGAAGCTTTCTAGCGCCCATGGATCGCCATATCCCTCTGTGGTCACACTCACCATTATCGCCAACGATGCATACGACGCTCGCGCTTTCTACCGCAGCAAGCAACACGCCACGCAAGCCATACTCTGGTTTGGTGCCCTCTTCAATGCGGGACAGGTGTTGTGCGGGATTGTGCTTTCGTTGTTTGCTCTGACCTACATTATGGTTGCCAAGTTGACAACCCGTCTAAGGAAATTCCTTCAGGCCGTAGGTGCGATCCGATCCGAAAACTTATCATGCAGTCACTTTGAGGAAACTCATGGCTCGAAAAGTTCTGTTCGGTCTTCAATGATCAACTTGCAGAACCTAGTAAACCGTGTTGGCCCTCTCCTTCCGATTGTCACAATCATGTGTTGCATCCCTCCAATTGACGCATCTGAGATCACAATTGCTCCACGTGTCACTCTTGACACCGGGCTTTCTGCCGTCTCGCTGCTCATCACTGCAACTTGGTTGATTAGACATCTCCAATCATTAAAAGTACGTACAAAAATGAACTCTTACTTCGGAACTGCCACAGGACTGCTCATCATCACATTCCTATCATGCATCACGATTGTAAGTGGAATTCCTGCAGCAACTCCTAGCCTTGCCAAAGTTGGTCATGGCATGGTTGCTCCCTTCCTCCTCTTCATCGTTATGTGGCTCTCTCTCCGCTATCTCATCACTCTTCTTCTCCGTCTATTTCCGAAGCAACTGCTCAAATATTATACTCAGCTTGACCTCCATCTCTACTTCCTCTTCTGCTATCAGCATTATCTTCCAGACATTCCTCTCAAGAAAGCTATCATTTCAAACGGCGCCTACACCGACCATCATCACACTACTACAAAATTCTGTAATAGTTGTGTTGGTTTTGGTCATTTAGACTCCGAATGCTCCGACTACACCCACCCCATCTTCAGCTACAAGAGATACTACAACATCCCAACAAAGCAGACAATTGAGGCATATCTCGAGGTACACACTCAGAACGAAATCTTCATCCACAATGACATCACCATCATCCGTGGCGATCTAGTTTTCATCAACAAAATCTTGAAGGACTATGATCACACCACGCTTGGTTCACTGTTCCCAGAAGACTTCCCACACCTCACCGTCCGGCGCGTTGACTACACGCCAGTAGTTAATGTAGATGGCACGATCAGGATCTTCCCAAACACAAAGTATTACAATCATACTGAGTATACACTTGACAAAGAATCGGACATCGACATCGCTCACTATCAGACAATCTACAGACAAACTACCCCTTTCAAAATCGGTTACGACATCCCTTGCGGCATCATCCCTCACGCGGACACAACCATTGTCCACACGCATGGATATGCCAACGGTCACATCGAAATCGACACTTCTTCCGCCTACTCTGACATCACTAATCTCTCTCTACGCCCTAGCACCGCATCATTCTCCTGTTCCATGTCCTCTGCTACTTCTCAAACCGGCTCTATTACCTCTAACTCCTCTTCTATCTCTGCCAGCTCTGCCAACTCTCTCGCCCAGAAATCAACAAAAGATCAGGTATTCAACTACATGTCAATCAGGCCCCGGCGAATCTATGATCCTTCTAACGATATCACCGTTGGAATCTTGACAGCCACTCTCCGACCCAATGACGTTCACAGCGACGCTCTCTATCCTGTCGAATTGCAATACGCATTCCCAGGTTGGACCGCTGACGAAATCATCAACGACGAGAACGGTATCAACATGCACGAATACACAAGCTGCAGACAAGAGACAAAGGACTTCCTCAACATGATCGACCCTCACAAGTTCAGTTCACACGTCAAATCTTCCACCACTCCCTCTTTCGTCACCCTCCACAACGGTTGCATCTGGAACACCAGTGACTCCATCATCGACATCGGTATCGCAAGTGCCAACAGACCCGACGGAGTCAGCCAGCGCATCCCAGACATGGTCAATGCTTACAACGTCCCACCTCCTGCAAGACGCCTCGGTTCATACACCAAATCTGGCCGAGTCTACTGCATCTGGGGAGCCCGCGTAAACAGTGCACCAACACCCTGCAAACACGTGAACGCCTGTAACTGCCTCGACACCAAATACCACCGTTACAACGCCTTCTACAACGCCGCCTCCACAATCATCAGCCGTGAACAGCTTACCACTGTCTCACTTTCTCTGAATGTCGGCTGCGGACCTCTGCAAGGCGACTGGAACACCTACGAACAGATCATCTTCAGGATTGCCAATGAGACCCAGTGTTACATCCGGATCTACATGAACAACGAAACCGGTGCTCATCACAACCCCATCACCAATCAAACAGGCAAGAACCGCAAGAAATGGCACAGTTACAGAGTCCAGGAGACTAAACTCCCTATCAACAAAACCCTCCGCTCAGTCAATGTCTCCCAAGCACAAAGAAGACGTGAACAGACACGCCCTGCACCGCCTACAATCCTTCCTTCAACTCCTCCTCAACCTGACATTCAGGAAGATGATGAGGTTCCACAGAACTTTGTAGAGCACTGCCAGCTTTTCTACAAACAACGACACGATCAACTCACCAATCTCTTCTCTCTTTGCCTCGGTATCATCATCCATCAATACATCTACGATGTTATGTATGGACTCCGAGTCATCGACCACACTGAGATCTTCCTCATGAGCATCGCCTTCACCACCACTATCATCTCTCTTCACAACTACAAGATCACTTCCATTCCTTCAACACTCGCAGGTATTCTCGTCGGCGATAACCCTGTCACCTGGTTCTTCTTCCTCATCGCACACAAATGCAAAGTCAGCTGCAGCCTCCAGATCCTCGGTATCCTCAACGCGATCAACCAATACAGTGCCTACACTGGAACTATCTGTCTCCTCTTCTACACTCTCTCTCCTTCTACCTGCACTTCTCTTGTTCGCTTCCTCCTCACACTTCTCCTCACAGTCACCGGAGCACAAGCCCAAGAAACAGAGCAAAAATCAGATACACATCTCTTTAACCAATTCACTCGCCTCATCGTCTACGCTCTCTGCGCCCACATCATCTACACCATTGTTAAGATGCTTGAACCACGTGAGGAACATGAGACCATTCAAGTCAGCACTACTCAGTCATCCAACTTCACTTCAACACGCCGTCGTACAACAACATGTGCATACACTCAGCCAACCACTGCCGCTGTTGTCATTGTTGTTGCCCTCACGTTCAGTCTGATCATTAGTACTGCTAGTTCTAACCAGATCTTTTCTCGTGACCCCTCACATAAATTCTACTCCTACTATGAACCAATCGAAAGCTGTGACAATCCCTCATACATCGGCCAAATCGACTACGATAGATTCTGGAAGATGCCAAGTACTTTCCGCTTCCCTAACGGCATGACTCTAGAGGACTATCTAATGGAAGAAGTCTGTTACGACGACTCCATCTTAGACCTCCTGCAGCCTGTCTACGTCATCGACGGAATCAACTTCGAAGTCACCCAGTCTATCAACTGTGACCACCATCTCAGTGTCAATAAAACTCAGCTCACATACTGTCTCGAACAAAGAGTGAGTGAAAAGGATATGACCCTAATGACACAAGCACAGCTAAAGAAGTTCGCCCTCAAGTACAGACGACGCGCAGATGAAAACAACACCATCTCTCACACCGTACAGACAGTAAACATTGTAGGCATCACTCTCACATACAGATCCAATCACACATACACTCTTCCATACGGTTCACTTACATGCAACTCTGAACACGCATACTGCTCATACATTGCCAAAGTTCTCGGTTCTGAACACACTCTTCCAGCCAGTGCTCTTCAGTACTGCCACGGTAATGAGGAATTCTGCGAATACAAGCGTTTCGACGACGCCGATCTTTGCACCCTCTACTATCGCGACCTCACCATCGCTCCAGACACTGACCCAGAAGATTTCAAGCTCGCTCAACAGTTCCGTGAACACGTGGCATCGCTCTGTGGTATCCGTGCCAGCATTCATGAAGCTCACATCTACGAACCCAAGTCCACCCCAAAGAGTAGACGTGGTGAATGGTACTCTTCCACTCTCCGTATCGCTAATCACCGCTCACGTAATGGACAATGCATTGTCAATGTCTGTGGCTCGGTCCCAGCCGACTTCACCGATCAAGGCATCGCATTCGAATACCAATTTGTCAACGATTGTTCCCCCTCAAACACCACTGCAGACTGCGTCGCTATTGACTTCGCATATGAGTTCGCTTACAGCTACATCCATAAGAAGGTCATGCACAATGGTCACGTCCCCTACATCAGTCGGATCGTGAACCTCATTCCAGGCATCCCTGAAGCTTACACGCGACTCGCCGCTGTCTACAATGCTGTGGTCAACATTCCCTCTGAAGAAATTGTTGATAGATTGTATGAACAGTTCGACAACACAGCCCAGCTCGCCACTCGCCGTCTCGAGAACATCAAGTATGTTCCAAAGATCGCTAAGATGACTGCTGAGGTATTGTTCGCTGATCGCATTGTCAAGAAATATACTCTCGTCGGTATCAGAACACTTTGCCTCGCCAGATTCGAAGAATCGGTATGCAAGAAACTGATTATTGCCGTCAATGGGTTCATCAACAACGATCACCTCATCATCGAAACAGACTTCGACAAAGCCACATTCACTGCACTGTACCATTTCATCACAAAGCACTACAAAGTCAAATACACTGCTCCCCAACCTGTATGTAAATTCGCCAAGAACCTCACTCCCACCCAGCGCTACATCAATGACTGCGACGTTCAGGTTGAACTGAAACGTTGTCACATCAACTTCGTCGAAGGTCAAGTGGATTATTCGCGCAGAAATGTCACAATCATCCACAACATCCCGACAAGTCAGATTGACGTCATCTTCACCGCCACTGGCACTGAATACTATGACTCAAACGGTCACCAGTTCGCCGCAATCACTGATAAGCGTTTCACTGTGAACGACACCACCTACACCCTCCCATCTGATCTAAAACTCATGGCACAAGGAAAGAACAAGCAGAGCAGACACTGGCATAACTATGGTCACCGCTTCTATAACGCTGAACTCATAAAGCCCGGCACTAACCGTGGTCATATGATTCCATCGTTTCTCGGCGGTCCCGCAGTCTATGCCAACGCCTTCTTGCAGACCATCCAAGCTAACCTAGATGATACACCTTTCGAAAATCAGGCAATCGGTGTCACATACAACAAGCACATCACTAGCTACAATCCAAATGACATCATCATTGGAGACGTTTCTGATCCTTGGTGCCACATCAACCCTTCCACACAATCAACTCCATCTCTTCCACTTCCACATAATGTAAGTGAAGCCGAGACATTCATCCTCACGCATGACAACATTTTCACTGTGACTCATGATCATCCTTACCATACTGAAGACGAATTCAAGCTTCTCCGCTCTCTCGCCCTTCCCTGTGGTGTTTATTCTTACACTATCAGTCTCAGAGGTGAAGTCGTCCGCCGATGGAACCCTTCTGATCAGACTGGTGGCAAGACTCTTCTACACCACCCTGTCAACACTACACACATCAGGACATGGGAACTCACTACCACGGTCCTCAAAACCGCACTTAGCACAATCGCGAAACTCCGTCATCCTGTCCTTCAAACCCTTGGACTAGAAACAGAATTCGTCACCAGTGCCCATCCTCTACACATCCGAAACACTCTCGGCTCTATGTACACCTACAAACATCTCTCTTATCTCCTCCCTATCGCCCTCCGTTGCGCTTCTGGTGTTGCTGTCAATTTCGGAATCAACACTCCGTTATCGAACTGCACATTAGACAACGGTCACGGCATCGAACAATCTGGTCTCCCTTCTCTCGAACACAACATTCAGAACTTCACTGCTCTCAACACTAACATTCCCACTACATACACTCTAAGTGGCGACACCCGTGACATGACTTGCCTCTACAACGCAATTAGGTTATGGGCTGACGCTAACGACTACACCACATCATTCACGGACAATGCAGACATCACTTTCCGTTTCGACAACACCGTCCTTCCCACACGTTGTTACAATTACAACATCCCGTCTACACATGCATGTGACAGTCCAACATACGACATCCCCGCCGAAGACCTAACCTACTTCCAGCAAGCCTCACTCGCAGTCATCTGCCGCGAACACTCCAACATGTACTGTCATCAGCTCGACATCGATAGCTATCCACGGCCATCGTATTCCGAGTTCATGGACAATCTCATCCCTCTCACCTGCGGAACATTTAACGCCACTGACTCAGTCCTCCGTTGTGCAACAGAATACCAGATCATCTACACTCCACCACAAGAATACAACACTACACTTGAACAATTCCGGATCGCTAACATGCACTGTCCCATTTACATCGAACCAACTCCCGGCATCCTCAACTCAAGCCGCGGTATCTACACATACAGTTACCAAGGCAGAGTCATCGGATCCAGTGAGCGAATCGGTACTACACGTCTCCCCTCTGACATTCTCATCCTCTACAAGAACATCACCGAAGTAAAGTTTAACACAGGTACAAAGCTTTGCCAATCCGAAGGGAATAACACCCTATTCCACAACGGTTGCAATCTTAAAGTCACCCATGGTAAACCTGCCTCTCCCATCTACACCACCTATCCAGACAGACGTCACGACATCATCCAAGCACAACTCACTCAGGACATTCTCAACACGATCATCAATGCTACCGGTAACCTCAACATTATGAAATATCGCCGTTCCACTCTCAACCTCACCTTCCCTTACCATCCGGTAGACATCAACATCGAGCAGATCGACGGTTGCCATGTTATCGATGAAGCCGCCCTCGAACAGTACAATCGTGATTATCAAATCGTCTACGAGCAACCTGAAATCGACGGCATTCTCGAAATCACCGTTCCAAACAACTTTGCTAAGGAGAAATTCTATCGCAAAGCTCTCGGCCACTGTTATCAGCTCCGGTTTATCTACACTGACAAAGTCATCAACGTAGACCCAGACCACACTGTCAACAACTGTCTCTATCTCACCAAGATCGCCGATATTCAAGTCTCCGGTAGCTTCTGTAACTACTTCCTCCCCTTCAAGTTCTACACCACGTCCAACGAAAGATGTCACAACTACGTCAGCAATCTCATGGAAATCTATGGTGTCCGCGGAGTTGACCTACCCTTCGGATTCCTAGACAAAGTAGAATGCTCAAACATCGAAGATACCAAGATCGAAATCATCAGCGACAAATGGGGCAACAACACCTACATCCATCCTGGCGCTGCACGTGACACATGGGGACATAATGTCATCATGAATGAATACACCACCGAAGGCGAGTTACTTAAGTCTCAGGTATACAACCAGTCTTACTTCACTTTCCTCGGCGGTCGTGTTCACCGTGACAACACCTACTGTCTCGCTCGGCCTTACGACACCACCTCTGTTTACATCGCACCCATCTGTTCATCCAGTTCAAATTCTCGTTGGTCCCTCATCTACAACATCCCAATCACTTATTTCAGACACGCACAGACATCCTACTACGACACTCTCGACCATTCCTCTGTCTATAGTCTGATCATCATCATCGTCTCATACTATCTTCTCACGCGATTCTTCGAACCGGTCACTGTCTGCTTCATCTACATTCTCATCACGAATGTCTTCGCACTCATCATCTACCAGTCTCGAGATCTCGCATACATCAGCAGTGTCATCTCAATGCTCTTTGGAACTCTCACCGAAATCCTCAAGCGCTGTATGGTCATTCCTACTGTCCTCTCCTTCCTCTTCACTATGACTTCTTACTGTAAGAAGGGCTCAATGATGAAGCGTCCACGCGATCACTTCGACATGTTCGTCGCTACATCATTCATGGCCTTCTCTCTGATCAACATCGGCTACATCTTCCTTCTCACCGGAATCGTCATCTTCATCGGACTCTACAAATTCATCGCCGCTCAATTCACTCAACCTCACTGGCGTACCTATGTCAACGTCGCTGTCAGCATTGACGACATCGCTGCCCTCGGTTACACTCAGACCAATCAGGTTAGAAAAGCAGCAGATGATCTCATGAAGAAATCCACCGACGACAAGTACTCCTACTATCAACAGCTCGACTTCTTCGTCCACGCCGCATTCCTCAACGCATACGCCCAAGCAATTGACTCCAAGATCCCACTCAACTTCACTCATCGTAACCTGAACTTTCGTGTTTCACAACCCAAGACAAACTTCCTTGTCGGTCTTGTCACTCACGAAGTAAACACAGGCAACAACACCAGAGTAGAAGATCTCAACAAACACCCATACAACAAGTACCGTAGTAACATCGTACGTGTATATGGTGAACGTGGTGATCTCAACGGCTTCCTCAGCGGCAAATTCCTCTACTTTCCTCGTCACATCTTCGACTCCTGTACTGACAACACTCTCACACGACACATCCGCGTCACAAAAGGAGAAGGGACTCATGACATCGAATTGTTGAGCGAAGAATATGACGCCACTCCTTTCATCAAAACCGACAGTCCATTCGCAGAAGCAACTGTACTCAAATTCGGTAAACTCCAACGCACTCAGTACGCATACTTCGTCACTGCTGATGACATCAGGGTTGGTTCAATGTCCGCCGACGGCTACCACAACATTTCTACCAAGGATGGTGACTGCGGTTCACTCCTCTTTGACCACCTTCACAATGTTGTTGGAGCTCACATCGTCGGCATTGCTAGCATCCCTCCTGTTAACGGTGCCCTGACCTGGAATGCAGAAAAGGAAATGCTCTGCGGACCAAATGATGACTACGATTACGATCCAGAAAAAGTCGGTCCACCCAAGGTATGGCCTGTAGAATCAATCACTGCTCTCAGCACGATCCTCAATCAGCTCAACTATGTCACCGGTGATGCCTTCACTACACCCAAACTCCCTACAAACTATCAGCTAATTGGTTGCGAGACACTGGACCAGTACGTCAATGCCCGTAATCTCGTTACCGGCCAATTCCCTCAGATCAAGGAGGCACTAGACGATTTTATCAACGGATACGTCGCCAACTTGCAACGAGGTACTGAAGCCTACAACGTAATCTACACCAGCATGAACGCACAGATCCGCATTGCTGACCTCTCTCCTCTCAGCAACTCGATCACTAACTGGCAATACCTCATCGATCCTCTCACTCGATTCCGCTGTTTCATCCTCGGACTCCTCAAGCAGTATCTCCGCCATCTCATCATCTACTTCCTTCTCCAGATCGCTTTCATCTGCTTCGATCACGGTTTCTTCTTCCGTGTATTGAGAGATCCAACCCACTTCCTCTTCTCCATCATCAGCACCGTTTTCATCTCTGTCAGCCCTCTTGCTAGCACGAATGACATCCTCTTCAAGTATCTCCTCAGCTACACTCTTGAATACAGATTCGCATATCTCAACGTCGAAACTCTAATTCAGTCATATCTCTATCTCAGTTCTCGCGAAGCAATCTTCTACACCTCTCGCAGGGTCAACAAGCTTTGCACCGTCTTCACTGTCATAGTCATGCTTCTAATTGACACCTTCTTCGTTGAAATCGGTGGCTACAATGTCCTCCCGATTCTCATCATCTGTATCCCTATTTTCTACCTTCGCACTGTAATGATGGGAGCTGCACAGATTCAAGTGTATTTCGAAGCTGATCTGCACAAACCTGCTGCAAACTTCATGACTCTCATCTACTTCTTGATCATCAACGCTATCTCTATCATCATCTATTGCTGGGGACTCTTCTCATTCAACGTTCACGCTAACACCATCTTGTTCGCCACTACCATCGTGCACTTCATCGCCTTCTACGTTCTCTCTCAGGAAGTTCAGAAGGTCTTTGAAGCTAACTCTTTCCGTGTCCCAAGACTTATCTACGTTGCTATCTCTTACATCTCTCACGTTCTCTGCCACATCTACTCTGCCGCTCTGAACAAGGTTTGCGAATGGATCCTCCAGATCATCATCAACGCTAACCGTCTAGTTCTTATCGGTAGTGGATCTTTTGGCATCTTCCTCACAATCTGTTTCCTCTTCTACTTCTTCAAGCAACGCTCCAACATGGCTAAACACGAATCAAATGACATCGCAGAAGCACATACACACTTCGACTCATTCGCCAAACTCACTACACTCATCGCCAACAATCCCAAGCTCGCTTGTATGAAACCATTCTGCGTCGACTACAATGACAATCGTGCGCGTATGACCCTCAAAGAAAAAGGTAACTGGGTTGTCAAAGTGCGCGACGCTCTCCTCACTCAATTCAGCCTCACCAACCCTGCTGATCTCGCTGAAGTGATCCACGAGTGCGCTAGTCATCCGACTCTGAACAAACTATTCTTCGACAGTCCAAAAGGTCTGAAGGTCTACCATGAGATCGACTCCAATCTCGATCAAGTCCCGTACAACGGTGAGAACGGTCAGATCAAATCTGATACTGCCGTTCTTGCTGAATACAGGAATGAGCTCAGCCTAATTGAATGGAAGATAGTTACCCTGCAGAAGGAACTCGCAGAAGCTAAAGCCGCAGAAGAAAGAGATGCGATTAAAGGGATTAACACACATCTAGCTGACCTCATGAAACAACGCAAAACACTCATCACACTCTCCAACACATTGAATCAGTCTATCATGGCTAGAGATGCTCAGGAACGCCGTGTTGCCAGACGTCACGCAAATGAAGAAGCAAATGAAATTGCTCGCGTGATCAAAGCACAACGACTCCGTGACTCTCTCACTCTCATCTTCAATACATTCATCAACAATCTCATCAAACTGACATCTGACTGCAATGCATTGAAATCATACGCTGACAATGTGCTCAAGTACGTGCCTGAAGAAACTAAGGACTTCCTCAAGCGTGCTGACAATTGTTACCGTCTTTCCCAGGACATGATTCTCATCGAAACTCCTGCCAGCCCTCTCTCTTACTTCAAAGAAAAGAATGGCATCATCGAAGTGATCAATTCCTGCAGCTATGACACCTTCAAGGACGGTATGGTTGTCAATCACATCCTCGACGGCACTACAAAGCTCCCTTACACTCTCGACTCTCTCAAATCCTCTACTCACGTCGTCTGCTATGAGCCAGATCGATCATCCAGTTACACAGACACCTGCAAACATGAGTTGAACTCCAAGGTCGGACAAACTCTTCCTTGTGGCACATCTCTTGAATGCAATCACTCTCACTACCACAACCAATTTGACTGTACCTCTGGCTACTTCGCTTTCATGGCTCAACATATCACAGAATGTGAGACATGCCTCGACACCTTCAAGCGTGGACAATGTGGTTGCGGATACCGATACAAGGTTCCCCGTGTCCTTCAGTCGTTCATTCTTCATGGCTCGAAATGTTCTCTCGTCACTCACGAACTCAGCTACTCTGGAACTGCCGCAGCTTTCAAACCATACTACGATGAAGCTACGCACAGTATCATGTACAAGTCCGCCGTGATCGCCTATCTCAAGAAGCCAGACACCTACACTAGCACATTCACCTACAACAACGAAACATACTATCTTCCCGTCCCACTCACTCACGACGTTGTCTCTATCCTCATTGCCTTCGCCACACGCAACGGCTCAATCCCGGTCAGCGAGGTTCACTTCGAAGCCTGCTTTGACCGTGTTGACGTCGAAGAAGACAGTGGTCTCCAATCATACTCTCTCATCGATACTCCATGCGCCAATGATGACCAGATCTGCTACCAGATTCAGACATGCCCATTCCACAACACCAAGGATGCCGCGTGTATGATCTGTGCAAATCTCGACGACGGCATCTATTCTGTCGTTCCAGCCGATTCATCATTCCACGAGCTTGCCAGGGAGCTTTCCATCACTCTCACTAATGTCACCAATCCTCCTCCTAAGAGACATGAGGCAAATTTTCAGACAAAGCCTCGTCGAGTCTTCCAGTAA
Protein
MEPFQVLSLLATSFSLLLLLRILDRGTTVLSAVRLTLRTTFFNESARRPLYWTSPAKWFNSLGQTTPRMENRSIKSVKLSSAHGSPYPSVVTLTIIANDAYDARAFYRSKQHATQAILWFGALFNAGQVLCGIVLSLFALTYIMVAKLTTRLRKFLQAVGAIRSENLSCSHFEETHGSKSSVRSSMINLQNLVNRVGPLLPIVTIMCCIPPIDASEITIAPRVTLDTGLSAVSLLITATWLIRHLQSLKVRTKMNSYFGTATGLLIITFLSCITIVSGIPAATPSLAKVGHGMVAPFLLFIVMWLSLRYLITLLLRLFPKQLLKYYTQLDLHLYFLFCYQHYLPDIPLKKAIISNGAYTDHHHTTTKFCNSCVGFGHLDSECSDYTHPIFSYKRYYNIPTKQTIEAYLEVHTQNEIFIHNDITIIRGDLVFINKILKDYDHTTLGSLFPEDFPHLTVRRVDYTPVVNVDGTIRIFPNTKYYNHTEYTLDKESDIDIAHYQTIYRQTTPFKIGYDIPCGIIPHADTTIVHTHGYANGHIEIDTSSAYSDITNLSLRPSTASFSCSMSSATSQTGSITSNSSSISASSANSLAQKSTKDQVFNYMSIRPRRIYDPSNDITVGILTATLRPNDVHSDALYPVELQYAFPGWTADEIINDENGINMHEYTSCRQETKDFLNMIDPHKFSSHVKSSTTPSFVTLHNGCIWNTSDSIIDIGIASANRPDGVSQRIPDMVNAYNVPPPARRLGSYTKSGRVYCIWGARVNSAPTPCKHVNACNCLDTKYHRYNAFYNAASTIISREQLTTVSLSLNVGCGPLQGDWNTYEQIIFRIANETQCYIRIYMNNETGAHHNPITNQTGKNRKKWHSYRVQETKLPINKTLRSVNVSQAQRRREQTRPAPPTILPSTPPQPDIQEDDEVPQNFVEHCQLFYKQRHDQLTNLFSLCLGIIIHQYIYDVMYGLRVIDHTEIFLMSIAFTTTIISLHNYKITSIPSTLAGILVGDNPVTWFFFLIAHKCKVSCSLQILGILNAINQYSAYTGTICLLFYTLSPSTCTSLVRFLLTLLLTVTGAQAQETEQKSDTHLFNQFTRLIVYALCAHIIYTIVKMLEPREEHETIQVSTTQSSNFTSTRRRTTTCAYTQPTTAAVVIVVALTFSLIISTASSNQIFSRDPSHKFYSYYEPIESCDNPSYIGQIDYDRFWKMPSTFRFPNGMTLEDYLMEEVCYDDSILDLLQPVYVIDGINFEVTQSINCDHHLSVNKTQLTYCLEQRVSEKDMTLMTQAQLKKFALKYRRRADENNTISHTVQTVNIVGITLTYRSNHTYTLPYGSLTCNSEHAYCSYIAKVLGSEHTLPASALQYCHGNEEFCEYKRFDDADLCTLYYRDLTIAPDTDPEDFKLAQQFREHVASLCGIRASIHEAHIYEPKSTPKSRRGEWYSSTLRIANHRSRNGQCIVNVCGSVPADFTDQGIAFEYQFVNDCSPSNTTADCVAIDFAYEFAYSYIHKKVMHNGHVPYISRIVNLIPGIPEAYTRLAAVYNAVVNIPSEEIVDRLYEQFDNTAQLATRRLENIKYVPKIAKMTAEVLFADRIVKKYTLVGIRTLCLARFEESVCKKLIIAVNGFINNDHLIIETDFDKATFTALYHFITKHYKVKYTAPQPVCKFAKNLTPTQRYINDCDVQVELKRCHINFVEGQVDYSRRNVTIIHNIPTSQIDVIFTATGTEYYDSNGHQFAAITDKRFTVNDTTYTLPSDLKLMAQGKNKQSRHWHNYGHRFYNAELIKPGTNRGHMIPSFLGGPAVYANAFLQTIQANLDDTPFENQAIGVTYNKHITSYNPNDIIIGDVSDPWCHINPSTQSTPSLPLPHNVSEAETFILTHDNIFTVTHDHPYHTEDEFKLLRSLALPCGVYSYTISLRGEVVRRWNPSDQTGGKTLLHHPVNTTHIRTWELTTTVLKTALSTIAKLRHPVLQTLGLETEFVTSAHPLHIRNTLGSMYTYKHLSYLLPIALRCASGVAVNFGINTPLSNCTLDNGHGIEQSGLPSLEHNIQNFTALNTNIPTTYTLSGDTRDMTCLYNAIRLWADANDYTTSFTDNADITFRFDNTVLPTRCYNYNIPSTHACDSPTYDIPAEDLTYFQQASLAVICREHSNMYCHQLDIDSYPRPSYSEFMDNLIPLTCGTFNATDSVLRCATEYQIIYTPPQEYNTTLEQFRIANMHCPIYIEPTPGILNSSRGIYTYSYQGRVIGSSERIGTTRLPSDILILYKNITEVKFNTGTKLCQSEGNNTLFHNGCNLKVTHGKPASPIYTTYPDRRHDIIQAQLTQDILNTIINATGNLNIMKYRRSTLNLTFPYHPVDINIEQIDGCHVIDEAALEQYNRDYQIVYEQPEIDGILEITVPNNFAKEKFYRKALGHCYQLRFIYTDKVINVDPDHTVNNCLYLTKIADIQVSGSFCNYFLPFKFYTTSNERCHNYVSNLMEIYGVRGVDLPFGFLDKVECSNIEDTKIEIISDKWGNNTYIHPGAARDTWGHNVIMNEYTTEGELLKSQVYNQSYFTFLGGRVHRDNTYCLARPYDTTSVYIAPICSSSSNSRWSLIYNIPITYFRHAQTSYYDTLDHSSVYSLIIIIVSYYLLTRFFEPVTVCFIYILITNVFALIIYQSRDLAYISSVISMLFGTLTEILKRCMVIPTVLSFLFTMTSYCKKGSMMKRPRDHFDMFVATSFMAFSLINIGYIFLLTGIVIFIGLYKFIAAQFTQPHWRTYVNVAVSIDDIAALGYTQTNQVRKAADDLMKKSTDDKYSYYQQLDFFVHAAFLNAYAQAIDSKIPLNFTHRNLNFRVSQPKTNFLVGLVTHEVNTGNNTRVEDLNKHPYNKYRSNIVRVYGERGDLNGFLSGKFLYFPRHIFDSCTDNTLTRHIRVTKGEGTHDIELLSEEYDATPFIKTDSPFAEATVLKFGKLQRTQYAYFVTADDIRVGSMSADGYHNISTKDGDCGSLLFDHLHNVVGAHIVGIASIPPVNGALTWNAEKEMLCGPNDDYDYDPEKVGPPKVWPVESITALSTILNQLNYVTGDAFTTPKLPTNYQLIGCETLDQYVNARNLVTGQFPQIKEALDDFINGYVANLQRGTEAYNVIYTSMNAQIRIADLSPLSNSITNWQYLIDPLTRFRCFILGLLKQYLRHLIIYFLLQIAFICFDHGFFFRVLRDPTHFLFSIISTVFISVSPLASTNDILFKYLLSYTLEYRFAYLNVETLIQSYLYLSSREAIFYTSRRVNKLCTVFTVIVMLLIDTFFVEIGGYNVLPILIICIPIFYLRTVMMGAAQIQVYFEADLHKPAANFMTLIYFLIINAISIIIYCWGLFSFNVHANTILFATTIVHFIAFYVLSQEVQKVFEANSFRVPRLIYVAISYISHVLCHIYSAALNKVCEWILQIIINANRLVLIGSGSFGIFLTICFLFYFFKQRSNMAKHESNDIAEAHTHFDSFAKLTTLIANNPKLACMKPFCVDYNDNRARMTLKEKGNWVVKVRDALLTQFSLTNPADLAEVIHECASHPTLNKLFFDSPKGLKVYHEIDSNLDQVPYNGENGQIKSDTAVLAEYRNELSLIEWKIVTLQKELAEAKAAEERDAIKGINTHLADLMKQRKTLITLSNTLNQSIMARDAQERRVARRHANEEANEIARVIKAQRLRDSLTLIFNTFINNLIKLTSDCNALKSYADNVLKYVPEETKDFLKRADNCYRLSQDMILIETPASPLSYFKEKNGIIEVINSCSYDTFKDGMVVNHILDGTTKLPYTLDSLKSSTHVVCYEPDRSSSYTDTCKHELNSKVGQTLPCGTSLECNHSHYHNQFDCTSGYFAFMAQHITECETCLDTFKRGQCGCGYRYKVPRVLQSFILHGSKCSLVTHELSYSGTAAAFKPYYDEATHSIMYKSAVIAYLKKPDTYTSTFTYNNETYYLPVPLTHDVVSILIAFATRNGSIPVSEVHFEACFDRVDVEEDSGLQSYSLIDTPCANDDQICYQIQTCPFHNTKDAACMICANLDDGIYSVVPADSSFHELARELSITLTNVTNPPPKRHEANFQTKPRRVFQ

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5LAK     E-value=0.021     Score=40.4     Identity=25.83%     Cov(Q)=3.71%     Cov(P)=48.09%
3D Structure

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
4072
Number of predicted TMHs:
22
Exp number of AAs in TMHs:
501.172999999997
Exp number, first 60 AAs:
11.51179
Total prob of N-in:
0.09584
POSSIBLE N-term signal
sequence
outside
1  -  123
TMhelix
124  -  146
inside
147  -  190
TMhelix
191  -  213
outside
214  -  222
TMhelix
223  -  245
inside
246  -  256
TMhelix
257  -  279
outside
280  -  288
TMhelix
289  -  311
inside
312  -  935
TMhelix
936  -  953
outside
954  -  988
TMhelix
989  -  1011
inside
1012  -  1022
TMhelix
1023  -  1045
outside
1046  -  1084
TMhelix
1085  -  1102
inside
1103  -  1133
TMhelix
1134  -  1156
outside
1157  -  2603
TMhelix
2604  -  2623
inside
2624  -  2629
TMhelix
2630  -  2649
outside
2650  -  2668
TMhelix
2669  -  2691
inside
2692  -  2711
TMhelix
2712  -  2734
outside
2735  -  3166
TMhelix
3167  -  3189
inside
3190  -  3195
TMhelix
3196  -  3218
outside
3219  -  3260
TMhelix
3261  -  3283
inside
3284  -  3287
TMhelix
3288  -  3310
outside
3311  -  3324
TMhelix
3325  -  3347
inside
3348  -  3353
TMhelix
3354  -  3373
outside
3374  -  3387
TMhelix
3388  -  3410
inside
3411  -  3422
TMhelix
3423  -  3445
outside
3446  -  4072
 
 
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