CoVDB Coronavirus Database (v3)   
Strain
Avian_EU714029 (Region: China;  Strain: Infectious bronchitis virus isolate SC021202, complete genome.;  Date: 2-Nov)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
EU714029(+):20361-23837
GenBank Accession
ACH72804.1
 

Sequence

CDS
ATGTTGGGGAAGTCACTGTTAATAGTGACTGTTTTGTTTGCACTATGTAGTGCCACTCTTTATACTCACGATTATGTTTACTACTACCAAAGTGCCTATAGACCACCAAATGGATGGCATTTGCAAGGGGGTGCTTATGCAGTAGTGAATTCTATTAATAAAACTAACAATGCAGGCGCCGCTAGCGAGTGTTCTGTAGGTGTTCTTTTTAATTATACTAACGGAAATGACGTTGGTTATAATAATAGTGCTTCTTCCGTAGCCATGACAGCACCGCTTCCTGGTATGTCTTGGTCTAAAACACAATTTTGTACTGCCCATTGTAACTTTTCGGATTTTACAGTGTTTGTTACACATTGTTTTGCAAATTCTTGTCCTTTAACAGGTAGGATAGAGAAAAACCATATTCGTATTTCTGCTATGAGAAATGGTTCTCTATTTTATAATTTAACAGTTAGTGTATCTAAATACCCTAAATTTAAATCGCTTCAATGTGTTAACAATTTCACTTCTGTTTATTTAAATGGTGACCTTGTTTTTACTTCTAACAAAACCACTGATGTTATAGGTGCTGGTGTGTATTTTAAAGCAGGTGGGCCTATAACCTACAAAATTATGAAAGAATTTAAGGTTTTGGCTTATTTTGTCAATGGTACTGTGCAAGATGTAATTCTGTGTGATGACACACCGAGAGGCTTGCTTGCATGTCAATATAATACTGGTAATTTTTCAGATGGGTTTTACCCTTTTACTAATTCTAGTTTAGTTAAGAAAAAGTTTATTGTTTATCGTGAGAATAGTGTTAATACTACTCTTATTTTAACTAACTATACTTTTTATAATGTGACTAATGCCCCGCCTAATCAAGGTGGTGTTCAGTCTATTTTAACTTATCAAACACAAACAGCTCAGAGTGGTTATTATAATTTTAATTTATCATTTCTGAGTAGTTTTGTGTATAAACAATCTGATTACATGTATGGGTCTTATCACCCTGCATGTAATTTTAGATTAGAAACTATTAATAATGGCTTGTGGTTTAATTCACTGTCAGTTTCTCTTGCTTATGGACCACTTCAAGGTGGGTGTAAGCAGTCAGTTTTTAGTAGTAGAGCCACTTGTTGTTATGCTTATTCATATAATGGTCCTCGCGCTTGTAAGGGTGTTTATGCAGGCGAGTTACGACAAAATTTTGAATGTGGACTGTTGGTTTATGTTACTAAGAGCGATGGCTCTCGTATACAAACAGCCACCGAGCCACCAGTCATAACTCAACACAATTATAATAATATTACTTTAAATACTTGTGTTGATTATAATATATATGGCAGAGTTGGTCGAGGTTTCATTACTAATGTAACTGACTTATCATCTAGTTATAATTATTTAGCAGATGGAGGGTTGGCTATTTTAGATACATCAGGTGCCATAGACATCTTTGTTGTACAAGGTGAACATGGTTTTAATTATTACAAGGTTAATCCCTGTGAAGATGTAAACCAGCAGTTTGTAGTTTCTGGTGGTAAATTAGTAGGTATTCTTACCTCACGTAATGCAACAGGTTCTCAGCCCCTTGAGAATCAATTCTACATTAAACTCACTAAAGAGACACGTCGTTTTAGACGTTCTACTAGTGAAAATGTAACAAGTTGTCATTATGTAAGTTATGGCAGGTTTTGTATACAACCTGATGGTTCTATTAAGCAAATAGTACCGCAAGAATTAGAAAACTTTGTGGCACCTTTGTTAAATGTTACTGAAAATGTGCTCATACCTAACAGTTTTAATTTAACTGTTACAGATGAGTACATACAAACACGTATGGATAAAGTTCAAATTAATTGCCTGCAATATGTTTGTGGTAATTCTTTGGATTGTAGGAAGTTATTTCAACAATATGGTCCTGTCTGTGACAACATATTGTCTATAGTAAATAGTGTTGGTCAAAAAGAAGATATGGAACTTTTAAGTTTCTATTCTTCTACTAAACCAGCTGGTTATAATGCACCTGTTTTTAGTAATATTAGTACTGGTGATTTTAATATTTCTCTTTTATTAACACCATCTAGTAGTCCTAGAGGTCGTTCTTTTATAGAAGATTTGTTATTTACAAGTGTTGAAACAGTTGGTTTGCCAACTGATGCTGAATATAAGAAATGCACAGCAGGACCTTTGGGTACTCTTAAAGACCTTGTTTGCGCTAGAGAATATAATGGTTTGTTAGTACTGCCCCCTATTATTACGGCAGATATGCAAACAATGTATACTGCATCTTTAGTAGCATCTATGGCCTTTGGTGGTATTACAGCCGCCGGTGCTATACCTTTTGCTACTCAGATTCAGGCAAGAATTAACCATCTTGGTATTACACAGTCTTTGTTGTTAAAAAATCAAGAGAAAATTGCAGCTTCCTTTAATAAGGCCATTGGTCATATGCAGGAAGGTTTTAGAAGCACTTCGCTAGCATTACAACAGGTTCAAGACGTTGTTAATAAGCAGAGTGCTATTCTTACTGAAACTATGAATTCTCTTAATAAGAATTTTGGTGCCATTTCATCAGTAATTCAAGACATTTATGCGCAACTTGATGCAATTCAAGCAGATGCACAAGTTGACCGTCTTATTACTGGCAGACTCTCTTCTCTCTCAGTGCTAGCCTCTGCTAAGCAGTCTGAGTACATTAGAGTTTCTCAACAACGTGAATTAGCCACTCAAAAAATTAATGAGTGTGTTAAATCACAATCTAATAGGTATGGATTTTGTGGTAGTGGAAGACATGTTCTTTCGATACCACAAAATGCACCTAATGGTATAGTGTTTATACACTTTACTTACACCCCAGAGAGTTTTGTTAATGTTACTGCAATAGTGGGTTTTTGTGTACAGCCTGCTAATGCTAGTCAGTATGCAATAGTGCCTGTTAATGGTAGAGGTATTTTTATACAAGTTAATGGTAGTTACTATATCACTGCACGTGATATGTATATGCCTAGAGACATTACTGCAGGAGATATAGTTACTCTTACCTCTTGTCAAGCAAATTATGTTAATGTAAATAAAACCGTCATTACTACATTTGTAGAAGATGACGATTTTGATTTTGATGATGAGTTGTCGAAATGGTGGAATGACACTAAGCATGAGCTACCAGATTTTGACGACTTCAATTACACAGTACCTATACTGAATATTAGCGGTGAAATTGATCGTATTCAAGGTGTTATACAGGGTCTTAATGACTCCATTATAGACCTTGAAGAACTGTCAATAATCAAAACTTATATTAAATGGCCTTGGTATGTTTGGCTTGCCATAGGCTTTGCCATTATTATTTTTATCCTTATCTTGGGATGGGTGTTTTTCATGACAGGTTGTTGTGGTTGTTGTTGTGGATGCTTTGGTGTCATTCCTCTAATGAGTAAGTGTGGTAAGAAGTCCTCTTATTACACGACTTTTGATAATGATGTGGTAACTTAA
Protein
MLGKSLLIVTVLFALCSATLYTHDYVYYYQSAYRPPNGWHLQGGAYAVVNSINKTNNAGAASECSVGVLFNYTNGNDVGYNNSASSVAMTAPLPGMSWSKTQFCTAHCNFSDFTVFVTHCFANSCPLTGRIEKNHIRISAMRNGSLFYNLTVSVSKYPKFKSLQCVNNFTSVYLNGDLVFTSNKTTDVIGAGVYFKAGGPITYKIMKEFKVLAYFVNGTVQDVILCDDTPRGLLACQYNTGNFSDGFYPFTNSSLVKKKFIVYRENSVNTTLILTNYTFYNVTNAPPNQGGVQSILTYQTQTAQSGYYNFNLSFLSSFVYKQSDYMYGSYHPACNFRLETINNGLWFNSLSVSLAYGPLQGGCKQSVFSSRATCCYAYSYNGPRACKGVYAGELRQNFECGLLVYVTKSDGSRIQTATEPPVITQHNYNNITLNTCVDYNIYGRVGRGFITNVTDLSSSYNYLADGGLAILDTSGAIDIFVVQGEHGFNYYKVNPCEDVNQQFVVSGGKLVGILTSRNATGSQPLENQFYIKLTKETRRFRRSTSENVTSCHYVSYGRFCIQPDGSIKQIVPQELENFVAPLLNVTENVLIPNSFNLTVTDEYIQTRMDKVQINCLQYVCGNSLDCRKLFQQYGPVCDNILSIVNSVGQKEDMELLSFYSSTKPAGYNAPVFSNISTGDFNISLLLTPSSSPRGRSFIEDLLFTSVETVGLPTDAEYKKCTAGPLGTLKDLVCAREYNGLLVLPPIITADMQTMYTASLVASMAFGGITAAGAIPFATQIQARINHLGITQSLLLKNQEKIAASFNKAIGHMQEGFRSTSLALQQVQDVVNKQSAILTETMNSLNKNFGAISSVIQDIYAQLDAIQADAQVDRLITGRLSSLSVLASAKQSEYIRVSQQRELATQKINECVKSQSNRYGFCGSGRHVLSIPQNAPNGIVFIHFTYTPESFVNVTAIVGFCVQPANASQYAIVPVNGRGIFIQVNGSYYITARDMYMPRDITAGDIVTLTSCQANYVNVNKTVITTFVEDDDFDFDDELSKWWNDTKHELPDFDDFNYTVPILNISGEIDRIQGVIQGLNDSIIDLEELSIIKTYIKWPWYVWLAIGFAIIIFILILGWVFFMTGCCGCCCGCFGVIPLMSKCGKKSSYYTTFDNDVVT

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1816     Identity=83.36%     Cov(Q)=91.36%     Cov(P)=95.75%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
1158
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
59.4447299999999
Exp number, first 60 AAs:
17.92719
Total prob of N-in:
0.80484
POSSIBLE N-term signal
sequence
inside
1  -  4
TMhelix
5  -  27
outside
28  -  1098
TMhelix
1099  -  1121
inside
1122  -  1158
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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