CoVDB Coronavirus Database (v3)   
Strain
Avian_EU817497 (Region: China;  Strain: Infectious bronchitis virus strain H52, complete genome.;  Date: presumed 2009)
Gene
3a protein
Description
Annotated in NCBI,  3a protein
Location
EU817497(+):23802-23975
GenBank Accession
ACJ12835.1
 

Sequence

CDS
ATGATCCAAAGTCCCACGTCCTTCTTAATAGTATTAATTTTGCTTTGGTGTAAACTTGTACTAAGTTGTTTTAGAGAGTTTATTATAGCGCTTCAACAACTAACACAAGTTTTACTCCAAATTATCGATAGTAATTTACAGTCTAGACTGACCCTTTGTCACAGTCTAGACTAA
Protein
MIQSPTSFLIVLILLWCKLVLSCFREFIIALQQLTQVLLQIIDSNLQSRLTLCHSLD

Summary

Uniprot
A5Z139  
Pubmed
18295413    29141204   
EMBL
EF602450    KY799582    ABQ84847.1    AVI69486.1   
Pfam
PF03617   IBV_3A
Interpro
IPR005214   IBV_3A
ProteinModelPortal
A5Z139  

Ontologies

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
57
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
22.06808
Exp number, first 60 AAs:
22.06808
Total prob of N-in:
0.90942
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  57
 
 
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