CoVDB Coronavirus Database (v3)   
Strain
Avian_FJ376622 (Region: Hong Kong;  Strain: Munia coronavirus HKU13-3514;  Date: 7-Apr)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
FJ376622(+):19499-22969
GenBank Accession
ACJ12062.1
 

Sequence

CDS
ATGCAGAGCACTTTACTAATGCTTATGTCTGCAACTTTAGCGCATGCTAAGATTGCGGACACAATTTTTGATGCGCTCACATTTCCTAACGCGCATCGTTTTCTCTACCGTCAGAACCGCTATCGCACACAGCGTGACTCTGGTATTTCTGTTGGCTCTTTACCTGGCTATCCTACCCAGCATTTAGAGCTTATATCACCACTTACTAACTCTACGCTGCCTATTAATGGATTGCATAGGAGTTACCAACCATTATATTTTGCATGTTTCACCGACATTGTCAACAACACGCTAAACATGCACCTCACACAGAATGAACAAGCCACCTATAATTGTATGGGTGATGCTATAAGGAACATGTCTCATGATGCTCTCAGATTGTTCCTAAATCTAACATCTGCAAACCGGGCCTCCATTCGAGTTATCGGCGCGGATAATACTACCTATATGTTCGTCTGCTCTGAACACCTAAACATTTCAACAGCCATGGCGAACTCCACTTTCTATTCTGCTAATAAGCAGCTTTATTGTTTTACAAATGAGACCTACTTGGGACCATTGCCAGCAAACCTGTCGGATATCACCATATATCGGACGGGTCAATTTTATGTTAATGGTTACTTGTTAGGTACGCTACCCATTAGTGTCAAAACAGTTCGCATTGAAACTGGTGGTTTACCAGCTCATAGCACCTATTTTGCCCTTGCGAATCTCACGGACACTCTCATCACACTTGCAAATACAACTATTACACAAGTTACTTATTGTGAATCATCCACCATTGACAATATAGCTTGTCAACGCTCCACACATACTCTTGCTGATGGCTTTTATTCTGCACAGCAAGATTTATTTCAATCTAATGTTAGAACTGTCATAACCCTGCCTAAGTTACAAGAGGTTGAGGTTATACAGGTTAACATTACAGCAACATTTAACTTTGGTGAACCCAAAGTAACTGCCATTACTATTAATGGTAATGACAGCTACTGTGTGACCAAGCCTTATTTTACCATACAGTCAAACTTTGTTTGTACTGGATGCACCCTTCAGGTTCGCAGCAGTACATGCAACTTTGACCTGTTTGCTATTAATAATGGCATGTCCTTTTCGCAGTTTTGCATTAGCGCAACTGCAGGCTCATGCTCCAGTAAAATAGTTGCAACCTATGTCTGGAATTATGACACAGGTAGAAACCTTTATTTTACATTTACAGAGGGCCAAATGTTTACGGGCACCTCTACAACAACTCCTAATGCTATTGACACATCTTCTATTATTGAAGGTGTGTGCACTGATTATACCATTTATGGTATTTCAGGCACAGGCATTATTAAATCCTCTGACTTACAACTTCATAATGGCATAGCATTTACATCACCCACTGGTGGTCTCTATGCCTTTAAAAATGTTACGACAGGCCAGGCTTATCAGGTCTTACCCTGTGTAAGAACTACCCAGGCTGTTGTAATAAACAACACAATAGTTGGTGTCATCACATCAACTAACACAACTTTGTATGGGTTTCAGCGGGTAATACCCACTCCTACCTTTTACTACACCACTAATGCTACCAACAATTGCACTCAACCAATTTTGTCATATGGACCTTTAGCCGTTTGTAGTGACGGGTCCATATCTGCAACCACTACATTGCAGGACACTCGCCCATCAATAGTTTCTCTTTATAATGGCGAGATTGATGTACCATCTGCATTTGCTTTGACTGTTCAATCTGAGTATCTTCAGATACAGTCTGAGCAGGTTGTTATAGATTGTGCCCAGTATGTATGCAATGGCAATCCCCGTTGCTTACGGTTGCTTTCCCAGTACACGTCAGCATGTTCAAACATTGAGTCGGCGCTTCATGCCTCGGCTCAGTTGGACAGCAGGGACATTACAGACATGTTTCAAACCTCCACCCAGTCGCTGGAGCTTGCAAACATTACAAATTTTCAAGGTGATTATAATTTCACCAACATTCTTAGCAATAAGATAGGAGAGAAGTCCGTTATAGAGGATCTCCTCTTCAATAAAGTTGTTACCAATGGCCTAGGCACTGTAGACCAGGACTACAAAGCCTGTTCTAAGGACATGGCCATTGCTGATTTAGTTTGTTCTCAGTATTACAATGGCATTATGGTTCTACCAGGTGTTGTTGATGCTGAGAAGATGGCAATGTATACTGGCTCTCTCACTGGAGCCATGGTATTTGGTGGCCTCACAGCTGCAGCTGCTATTCCTTTTTCAACTGGAGTTCAGGCACGTCTTAATTATGTTGCTCTGCAGACTAATGTCCTGCAAGAGAACCAGAAAATTCTTGCTGACTCCTTCAATCAAGCAGTTGGCAATATTTCATTAGCACTTTCCTCTGTTAACGATGCTATTCAGCAGACCTCAGAGGCTTTAAATACAGTGGCCAATGCCATAAACAAAATACAAACAGTTGTGAACCAACAAGGTGAAGCCCTTTCCCACCTAACGGCACAATTGTCTAACAATTTTCAGGCCATATCAACATCTATTCAGGACATTTATAATCGTCTTGAAGAGGTAGAGGCTAACCAGCAAGTTGATAGGCTCATAACAGGTCGCCTATCTGCTCTTAATGCATATGTTACGCAGCTTCTCAACCAGATGTCACAGATTCGGCAGTATAGGTTGCTGGCTCAACAGAAAATCAATGAATGTGTCAAGTCACAATCCACTCGCTATGGATTTTGTGGCAATGGCACGCACCTTTTTTCGTTAACACAAGCTGCGCCTAATGGCATTTTGTTTATGCATGCAGTTCTTGTGCCCACTAAATTCGCGCGTGTCACAGCTTCAGCTGGCATTTGCGTGGACAGCACTAAAGGTTACTCCCTCCAGCCTCAGCTTGTGCTCTTTAATATTAATGGCACCTGGAGGGTTACACCTAGGAACATGTACGAACCCCGCATACCTAGGTCTGCGGATTTCGTACCTCTTACTGAATGCAGTGTTACCTATTACAACACCACTGCATCACAATTGCCTACCATAGTCCCGGACTTTGTTGATGTCAATCAAACTGTCAGTGACATTATAGGCTCCCTACCTAACCCTACACCACCTAGCCTGGTTGTAGATTTTTATAACCATACTATACTCAACCTTAGTGCTGAGATATTAGACTTACAGCAACGCGCTGATAATCTATCACAGATTTCAGAGCAGCTGCAACACTATATTGACAACCTTAATAACACTCTTGTAGATTTAGAGTGGCTTAATAAGGTTGAAACATACATTAAATGGCCCTGGTGGGTGTGGCTGCTTATTGTTTTAGCCATAGCTGCTTTCGCCTGTATATTAGTCACAATCTTCCTATGCACTGGATGCTGTGGAGGATGCTTTGGTTGTTGTGGTGGTTGCTTTGGTCTCTTCTCTCACAAAAAGAGGGACACGGAACCGACACCCATCACATCTTTCAAGCTTAAAGAATGGTAG
Protein
MQSTLLMLMSATLAHAKIADTIFDALTFPNAHRFLYRQNRYRTQRDSGISVGSLPGYPTQHLELISPLTNSTLPINGLHRSYQPLYFACFTDIVNNTLNMHLTQNEQATYNCMGDAIRNMSHDALRLFLNLTSANRASIRVIGADNTTYMFVCSEHLNISTAMANSTFYSANKQLYCFTNETYLGPLPANLSDITIYRTGQFYVNGYLLGTLPISVKTVRIETGGLPAHSTYFALANLTDTLITLANTTITQVTYCESSTIDNIACQRSTHTLADGFYSAQQDLFQSNVRTVITLPKLQEVEVIQVNITATFNFGEPKVTAITINGNDSYCVTKPYFTIQSNFVCTGCTLQVRSSTCNFDLFAINNGMSFSQFCISATAGSCSSKIVATYVWNYDTGRNLYFTFTEGQMFTGTSTTTPNAIDTSSIIEGVCTDYTIYGISGTGIIKSSDLQLHNGIAFTSPTGGLYAFKNVTTGQAYQVLPCVRTTQAVVINNTIVGVITSTNTTLYGFQRVIPTPTFYYTTNATNNCTQPILSYGPLAVCSDGSISATTTLQDTRPSIVSLYNGEIDVPSAFALTVQSEYLQIQSEQVVIDCAQYVCNGNPRCLRLLSQYTSACSNIESALHASAQLDSRDITDMFQTSTQSLELANITNFQGDYNFTNILSNKIGEKSVIEDLLFNKVVTNGLGTVDQDYKACSKDMAIADLVCSQYYNGIMVLPGVVDAEKMAMYTGSLTGAMVFGGLTAAAAIPFSTGVQARLNYVALQTNVLQENQKILADSFNQAVGNISLALSSVNDAIQQTSEALNTVANAINKIQTVVNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLSALNAYVTQLLNQMSQIRQYRLLAQQKINECVKSQSTRYGFCGNGTHLFSLTQAAPNGILFMHAVLVPTKFARVTASAGICVDSTKGYSLQPQLVLFNINGTWRVTPRNMYEPRIPRSADFVPLTECSVTYYNTTASQLPTIVPDFVDVNQTVSDIIGSLPNPTPPSLVVDFYNHTILNLSAEILDLQQRADNLSQISEQLQHYIDNLNNTLVDLEWLNKVETYIKWPWWVWLLIVLAIAAFACILVTIFLCTGCCGGCFGCCGGCFGLFSHKKRDTEPTPITSFKLKEW

Summary

Uniprot
A0A5C0PWA5  
EMBL
MN064712    QEJ80684.1   
Pfam
PF01601   Corona_S2
PF01600   Corona_S1
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A5C0PWA5  
PDB
6B7N     E-value=0.0     Score=1461     Identity=69.80%     Cov(Q)=93.94%     Cov(P)=98.10%
3D Structure

Ontologies

Subcellular Location

From MSLVP

Topology

Length:
1156
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
37.37515
Exp number, first 60 AAs:
0.03854
Total prob of N-in:
0.00226
outside
1  -  1094
TMhelix
1095  -  1117
inside
1118  -  1156
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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