Strain
Deer_FJ425189
(Region: USA: Ohio; Strain: Sambar deer coronavirus US/OH-WD388/1994, complete genome.; Date: 1-Jan-94)
Gene
32 kDa non-structural protein
Description
Annotated in NCBI,
32 kDa non-structural protein
Location
GenBank Accession
Sequence
CDS
ATGGCAGTCGCTTATGCAGACAAGCCTAATCACTTTATCAATTTTCCACTTACCCAGTTTCAGGGTTTTGTGTTAAATTATAAAGGTTTACAATTTCAACTTCTCGATGTAGGAGTGGATTGTAAAATACAAACAGCGCCTCACATTAGTCTTGCTATGCTGGATATTCAGCCTGAAGACTACAGAAGTGTTGATGTTGCTATTCAAGAAGTTATTGATGATATGCATTGGGGTGAGGGCTTTCAGATTAAATTTGAAAACCCCCATATCCTAGGAAGATGCATAGTTTTAGATGTTAAAGGTGTAGAAGAATTGCATGATGATTTAGTTAATTACATTCGTGATAAAGGTTGTGTTGCTGACCAATCCAGGAAGTGGATTGGACATTGCACCATAGCCCAACTCACTGATGCTGCACTTTCCATTAAGGAAAATGTTGATTTTATAAACAGCATGCAATTCAACTATAAAATCACTATCAATCCCTCATCACCGGCTAGACTTGAAATAGTTAAGCTTGGTGCTGAAAAGAAAGATGGTTTTTATGAAACCATAGCTAGCCACTGGATGGGAATTCGTTTTGAATATAATCCACCCACTGATAAGCTAGCTATGATTATGGGTTATTGTTGTTTAGAAGTGGTGCGTAAAGAGCTAGAAGAAGGTGACCTTCCCGAGAATGATGATGATGCTTGGTTTAAGCTATCGTACCATTATGAAAACAATTCTTGGTTCTTTCGATATGTCTACAGGAAAAGTTCTTATTTCCGTAAGTCTTGTCAAAATTTAGATTGTAATTGTTTGGGGTTTTATGAATCTTCAGTTGAAGAAGACTAA
Protein
MAVAYADKPNHFINFPLTQFQGFVLNYKGLQFQLLDVGVDCKIQTAPHISLAMLDIQPEDYRSVDVAIQEVIDDMHWGEGFQIKFENPHILGRCIVLDVKGVEELHDDLVNYIRDKGCVADQSRKWIGHCTIAQLTDAALSIKENVDFINSMQFNYKITINPSSPARLEIVKLGAEKKDGFYETIASHWMGIRFEYNPPTDKLAMIMGYCCLEVVRKELEEGDLPENDDDAWFKLSYHYENNSWFFRYVYRKSSYFRKSCQNLDCNCLGFYESSVEED
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF05213
Corona_NS2A
Interpro
IPR039573
NS2A-like
ProteinModelPortal
PDB
4Z5V
E-value=8e-68 Score= 209 Identity=51.74%
Cov(Q)=72.30% Cov(P)=96.63%
3D Structure
Ontologies
KEGG
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
278
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0530500000000001
Exp number, first 60 AAs:
0.05288
Total prob of N-in:
0.06693
outside
1 - 278
