Strain
Murine_FJ647219
(Region: USA: Pennsylvania; Strain: Murine coronavirus RJHM/A, complete genome.; Date: presumed 1999)
Gene
non-structural protein ns2
Description
Annotated in NCBI,
non-structural protein ns2
Location
GenBank Accession
Full name
Non-structural protein 2a
Alternative Name
ns2
Sequence
CDS
ATGGCTGCGAGAATGGCCTTTGCTGACAAGCCTAATCATTTTATAAACTTTCCTCTAGCCCAATTTAGTGGCTTTATGGGTAAGTATTTAAAGCTTCAGTCTCAACTTGTGGAAATGGGTTTGGACTGTAAATTACAAAAGGTACCACATGTTAGTATTACCCTGCTTGACATTAAAGCAGACCAATACAAACAGGTGGAATTTGCAATACAAGAAATAATAGATGATCTGGCGGCATATGAGGGAGATATTGTCTTTGACAACCCTCATATGCTTGGCAGATGTCTTGTTCTTGATGTTAAAGGATTTGAAGAGTTGCATGAAGATATTGTTGAAATTCTCCGCAGAAGGGGTTGCACTGCAGATCAATCCAGACAATGGATTCCGCACTGCACTGTGGCCCAATTTGATGAAGAAAAAGAAATAAAAGAAATGCAATTCTATTTTAAATTGCCCTTCTATCTCAAGCATAACAACCTACTTACGGATGCTAGGCTTGAGCTTGTGAAGATAGGTTCTTCCAAAGTAGATGGGTTTTATTGTAGTGAACTAAGTATTTGGTGTGGTGAGAGACTTTGTTACAAGCCCCCAACCCCCAAATTCAGTGATATATTTGGCTATTGCTGCATAGATAAAATACGTGGTGATTTAGAAATAGGAGACCTACCGCCAGATGATGAGGAAGCGTGGGCCGAGCTAAGTTACCACTATCAAAGAAACACCTACTTCTTCAGACATGTGCACGATAATAGTATCTATTTTCGTACCGTATGTAGAATGAAGGGTTGTATGTGTTGA
Protein
MAARMAFADKPNHFINFPLAQFSGFMGKYLKLQSQLVEMGLDCKLQKVPHVSITLLDIKADQYKQVEFAIQEIIDDLAAYEGDIVFDNPHMLGRCLVLDVKGFEELHEDIVEILRRRGCTADQSRQWIPHCTVAQFDEEKEIKEMQFYFKLPFYLKHNNLLTDARLELVKIGSSKVDGFYCSELSIWCGERLCYKPPTPKFSDIFGYCCIDKIRGDLEIGDLPPDDEEAWAELSYHYQRNTYFFRHVHDNSIYFRTVCRMKGCMC
Summary
Similarity
Belongs to the coronaviruses ns2a protein family.
Uniprot
Pubmed
EMBL
Pfam
PF05213
Corona_NS2A
ProteinModelPortal
PDB
4Z5V
E-value=4e-140 Score= 392 Identity=93.53%
Cov(Q)=75.85% Cov(P)=96.63%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
265
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.10589
Exp number, first 60 AAs:
0.10589
Total prob of N-in:
0.13449
outside
1 - 265
