CoVDB Coronavirus Database (v3)   
Strain
shrimp_FJ848673 (Region: Thailand;  Strain: Yellow head virus strain YHV1992, complete genome.;  Date: 1992)
Gene
replicase polyprotein 1a
Description
Annotated in NCBI,  replicase polyprotein 1a
Location
FJ848673(+):72-12302
GenBank Accession
ACS44767.1
 

Sequence

CDS
ATGGAACCTTTTCAGGTTCTATCGTTGTTGGCAACATCCTTCAGTCTACTCCTATTGCTTAGGATCCTAGACCGCGGCACGAATGTTCTGTCTGCCGTCAGATTGACTCTCAGGACCACTTTCTTCAATGAAAGTGTACGACGCCCGCTCTATTGGACCAGCCCCGCCAAGTGGTTCAATTCGCTTGGCCAGACTACTCCCAGGATGGAAAAACGATCGATCAAGAGTGTGAAGCTTTCTAGCGCCCATGGATCGCCATATCCCTCTGTGGTCACACTCACCATTATCGCCAACGATGCATACGACGCTCGCGCTTTCTACCGCAGCAATCAACACGCCACGCAAGTCATACTCTGGCTTGGTGCCCTCTTCAATGCGGGACAGGTGTTGTGCGGGATTGTGCTTTCGTTGTTTGCTCTGACCTACATCATGGTTGCCAAGTTGACAACCCGTCTAAGGAAATTCCTTCAGGCCGTAGGTGCGATCCGATCCGAAAACCTATCATGCAGTCACTTTGAGGAAACTCATGGCTCGAAAAGTTCTGTTCGGTCTTCAATGATCAACTTGCAGAACCTAGTAAACCGTGTTGGCCCTCTCCTTCCGATTGTCACAATCATGTGTTGCATCCCTCCAACCGACGCATCTGAGATTACTATTGCTCCACGTGTCACTCTTGACACCGGGCTTTCTGCCGTCTCGCTGCTCATCACTGCAACCTGGTTGATTAGACATTTCCAAACATCAAAAGTACGTACAAATATGAGCACTTCCTTCGGTACTGCCACAGGACTACTCATCATCACGCTCCTATCATGCATCACGATTGTAAGTGGAATTCCTGCAGCAACTCCTAGCCTTGCCAAAGTTGGTCATGGCATGGTTGCTCCCTTCCTCCTCTTCATCGTTATGTGGCTCTCTCTTCGCTATCTCATCACTCTTCTTCTCCGTCTATTTCCGAAGCAACTTCTCAAGTATTATACCCAGCTCGACCTCCATCTCTACTTCCTCTTCTGCTATCAGCATTATCTTCCCGACGTTCCTCTCAAGAAAGCTATCATCTCTCACGGCGCCTATACCGACCATCATCACACTACTACAAAATTCTGTAATAGTTGTGTTGGTTTTGGTCATCTAGACTCCGAATGCTCCGACTACACTCACCCCATCTTCAGCTACAAGAGATACTACAACATCCCAACAAAGCAGACAATTGAGGCATACCTCGAGGTACACACTCAGAACGAAATCTTCATCCACAATGACATTACCATCATCCGTGGCGATCTAGTTTTCATCAACAAAATCTTGAAGGACTACGATCACACCACGCTTGGTTCACTGTTCCCAGAAGACTTTCCACACCTCACCGTCCGCCGCGTTGACTACACTCCAGTAGTTAATGTAGATGGCACGATCAGGATCTTCCCAAACACCAAGTACTACAATCACACTGAGTATACACTTGACAAAGAATCGGACATCGACATCGCTCACTATCAGACAATCTACAGACAAACTACCCCTTTCAAAATCGGTTACGACATCCCTTGCGGTATCATCCCTCACGCGGACACAACCATTGTCCACACGCACGGATATGCCAACGGTCAAATCGAAATCGACACTTCTTCCGCCTACTCTGACATCACCAATCTCTCTCTTCGCCCTAGCACCGCCTCATTCTCTTGTTCTCTAGCCTCTCAGATGTCCTCTGCTACTTCTCAAACCGGCTCCATCACCTCTAACTCCTCCTCCATCTCTGCCAGCTCTGCCAACTCTCTCGCTCAGAAATCAACAAAAGATCAGGTATTCAACTACATGTCAATCAGGCCCCGGCGAATCTATGATCCTTCTAACGATCTCGCCGTCGGCATCTTGACAGCCACTCTCCGACCCAATGACGTTCACAGCGACGCTCTCTATCCTGTCGAATTGCAATACGCATTCCCAGGTTGGACCGCTGACGAAATCATCAACGACGAGAACGGCATCAACATGCACGAATACACAAGCTGCAGACAAGAGACAAAGGACTTCCTCAACATGATCGATCCCCATAAGTTCAGTTCACATGTCAAATCCTCCACCACTCCCTCTTTCGTCACCCTCCACAACGGTTGCATCTGGAACACCAGTGACTCTATCATCGACATCGGTATCGCAAGTGCCAATAGACCCGACGGAGTCAGCCAGCGCATCCCAGACATGGTCAATGCTTACAACGTCCCACCTCCTGCAAGACGCCTCGGTTCATACACCAAATCTGGCCGAGTCTACTGCATCTGGGGAGCTCGTGTAAACAGTGCACCAACACCCTGCAAACACGTGAACGCCTGTAACTGCCTCGACACCAAATATCACCGTTACAACGCCTTCTACAACGCCGCCTCTACAATCATCAGCCGTGAACAGCTTACCACTGTCTCACTGTCTCTGAACGTTGGCTGCGGACCTCTGCAAGGCGACTGGAACACCTACGAACAGATCATCTTCCGGATTGCCAACGAGACCCAGTGCTACATCCGAATCTACATGAACAACGAAACCGGTGCTCATCACAACCCCATCACCAATCAAACAGGCAAGAACCGCAAGAAATGGCACAGTTACAGAGTCCAGGAAACTAAACTCCCTATCAACAAAACCCTCCGCTCAGTCAATGTCTCGCAAGCACAAAGAAGACGTGAACAGACACGCCCTGCACCGCCTACAATCCTTCCTCCAACTCCTCCTCAACCTGACACTCAGGAAGATGATGATGTTCCACAGAATTTTGTAGAGCATTGCCAGCTTTTCTACAAACAACGACACGATCAACTCATCAATCTCTTCTCTCTTTGCCTCGGCATCATCATCCATCAATACATCTACGATGTTATGTATGGACTCCGAGTCATCGACCACACTGAGATCTTCCTCATGAGCATCGCCTTCACCACCACTATCATCTCTCTTCACAACTACAAGATCATTTCCATTCCTTCAACACTCGCAGGTATTCTCGTCGGCGATAACCCTGTCACCTGGTTCTGCTTCCTCATCGCACACAAATGCAATGTCAGCTGCAGCCTCCAGATCCTAGGTATCCTCAACGCGATCAATCCATACAGTGCCTACACCGGAACCATCTGTCTCCTCTTCTACACTCTCTCTCCTTCTACCTGCACTTCTCTTGTCCGCTTCCTCCTCACACTTCTCCTCACAGTCACCGGAGCACAAGCCCAAGAAACAGAGCAAAAATCAGATACACATCTCTTCAAACAGTTCACTCGCCTCATCGTCTACGCTCTCTGCGCCCACATCATCTACACCATCGTCAAGATGCTTGAACCGCGTGAAGAACACGAGACCATCGCCGTCAGCACTAAGCAGTATTCCAACTTCGTTTCTACTCAACGTCGCACAACAACATGCTCCTACACTCAACCCACCACCACCGCAGTTGTCATCGCTGTCTTCCTCACCTTCACCCTCATGGTCTCCACTGCCAACGCTACCCAGATCTTCTCGCGTGACCCCTCTCACAAATTCTACTCTTACTACGAACCTATCGAAAGCTGTGACAATCCCTCATACATCGGCCAAATCGACTACGATAGATTCTGGAAGATGCCAAGTACTTTCCGCTTCCCTAACGGCATGACTCTCGAGGACTATCTAATGGAAGAAGTCTGTTACGACGACTCCATCCTAGACCTCCTGCATCCTGTCTACGTGATCGACGGAATCAACTTCGAAGTCACCCAGTCTATCAACTGCGACTACCACCTCAGTGTCAACAAAACCCAACTCACATACTGTCTCGAACAAAGAGTCAGTGAAAAGGACATGACTCTCATGACACAAGCACAGCTCAAGAAATTCGCCCTCAAGTACAGACGACGCGCAGATGAAAACAACACCATCTCTCACACCGTACAGACAGTAAACATCGTAGGCATCACTCTCACATACAGATCCAATCACACATACACTCTTCCATACGGTTCACTCACATGCAACTCTGAACACGCATACTGCTCATACATTGCCAAAGTTCTCGGTTCTGAACACACTCTCCCAGCCAGTGCTCTCCAGTACTGTCACGGTAATGAGGAATTCTGCGAATACAAGCGTTTCGACGACGCCGACCTTTGCACCCTCTACTACCGCGACCTCACCATCGCTCCAGACACTGACCCAGAAGATTTCAAGCTCGCTCAACAGTTCCGTGAACACGTGGCATCGCTCTGTGGTATCCGCGCCAGCATTCATGAAGCTCACCTCAACGAACCTAAATCCACCCCAAAGAGTAGACGTGGTGAATGGTACTCTTCCACTCTCCGTATCGCTAATCACCGCTCACGTAATGGACAATGCATTGTCAACGTCTGTGGCTCGGTCCCAGCCGACTTCACCGATCAAGGCATCGAATTCGAATACCAATTTGTCAACGATTGTTCCCCTTCCAACACCACTGCAGACTGCGTCGCTATTGACTTCGCATATGAGTTCGCTTACAGCTACATCCACAAGAAGGTCATGCACAATGGTCACGTCCCCTACATCAGTCGGATCGTGAACCTCATTCCAGGCATCCCTGAAGCTTACACGCGACTCGCCGCTGTCTACAATGCTGTGGTCAACATTCCCTCTGAAGAAATTGTTGATAGATTGTATGAACAGTTCGACAACACAGCCCAGCTCGCCACTCGCCGTCTCGAGAACATCAAGTATGTTCCCAAGATTGCTAAGATGACTGCTGAGGTATTGTTCGCTGATCGCATTGTCAAGAAATATACTCTCGTCGGTATCAGAACACTTTGCCTCGCCAGATTCGAAGAATCGGTATGCAAGAAACTGATTATTGCCGTCAATGGGTTCATCAACAACGATCACCTCATCATCGAAACAGACTTCGACAAAGCCACATTCACCGCCCTGTACCATTTCATCACAAAGCACTACAAAGCCAAATACACCGCTCCTCAACCTGTATGTAAATTCGCAAAGAACCTCACTCCCACCCAGCGCTACATCAATGACTGCGACGTTCAGGTTGAACTGAAACGTTGTCACATCAACTTCGTCGAAGGTCAAGTGGATTACTCACGCAGAAATGTCACGATCATCCACAACATCCCGACAAGTCAGATTGACGTCATCTTCACCGCCACCGGCACTGAATACTATGACTCAAACGGTCACCAGTTCGCCGCAATCACTGACAAGCGCTTCACCGTGAACGACACCACCTACACCCTCCCATCTGATCTAAAACTCATGGCACAAGGAAAGAACAAGCAGAGCAGACACTGGCATAACTATGGTCACCGCTTCTATAACGCTGAACTCATAAAGCCCGGCACCAACCGTGGTCATATGATTCCATCGTTTCTCGGCGGTCCCGCAGTCTATGCCAACGCCTTCTTGCAGACCATCCAAGCTAACCTAGATGATACACCTTTCGAAAATCAGGCAATCGGTGTAACATACAACAAGCACATCACTAGCTACAATCCAAATGATATTATCATTGGAGACGTTGCTGATCCCTGGTGCCACATCAACCCTTCCACTCAATCAACTCCATCTCTTCCACTTCCACACAATGTAAGTGAAGCCGAGAAATTTATCCTTACGCATGACAACATTTTCACTGTGACTCATGATCATCCTTACCATACCGAAGACGAATTCAAGCTTCTCCGCTCTCTCGCCCTTCCCTGTGGTGTCTATTCTTACACTATCAGTCTCAGAGGTGAAGTCGTCCGCCGATGGAACCCTTCTGATCAGACTGGTGGCAAGACTCTTCTACACCATCCTGTCAACACTACACACATCAGGACATGGGAACTCACTACCACGGTCCTCAAAACCGCACTTAGCACAATCGCGAAACTCCGTCATCCTGTCCTTCAAATTCTTGGACTAGAAACAGAATTCGTCACCAGTGCCCATCCTCTACACATCCGAAACACTCTCGGCTCTATGTACACCTACAAACATCTCTCCTATCTTCTCCCTATCGCCCTCCGCTGCGCCTCTGGTGTTGCTGTCAATTTCGGAATCAACACTCCGTTATCGAACTGCACATTAGACAACGGCCACGGCATCGAACAATCTGGTCTCCCTTCTCTCGAACACAACACTCAGAACTTCACTGCTCTCAACACTAACATTCCCACTACATACACTCTAAGTGGCGACATCCGTGACATGACTTGCCTCTACAACGCAATTAGGTTATGGGCTGACGCTAACGACTACACCACATCATTCACAGACAATGCAGACATCACCTTCCGCTTCGACAACACCGTCCTTCCCACACGCTGCTACAACTACAACATCCCGTCTACACATGCATGTGACAGTCCAACATACGACATCCCCGCCGAAGACCTAACCTACTTTCAGCAAGCCTCCCTCGCAGTCATCTGCCGCGAACACTCCAACATGTACTGCCATCAGCTCGACATCGACAGCTACCCACGGCCATCGTATTCCGAGTTCATGGACAATCTCATCCCTCTCACCTGCGGCACATTCAACGCCACTGACTCAGTCCTCCGTTGTGCAACAGAACACCAGATCATCTACACTCCACCACAAGAATACAACACTACACTTGAACAATTCCGGATCGCTAACATGCACTGTCCCATTTACATCGAACCAACTCCCGGCATCCTCAACTCAAGCCGCGGTATCTACACATACAGTTACCAAGGCAGAGTCATCGGATCCAGTGAGCGAATCGGCACTACACGTCTCCCCTCTGACATTCTCATCCTCTACAAGAACATCACCGAAGTAAAGTTTAACACAGGTACAAAGCTTTGCCAATCCGAAGGGAATAACACCCTATTCCACAACGGTTGCAATCTCAAAGTCACCCACGGTAAACCCGCCTCTCCCATCTACACCACCTATCCAGACAGACGTCACGACATCATTCAAGCACAACTCACTCAGGATATTCTCAACACGATCATCAATGCTACCGGTAACCTCAACATCATGAAATATCGCCGTTCCACTCTCAACCTCACCTTCCCTTACCATCCAGTAGACATCAACATCGAGCAGATCGACGGTTGCCATGTTATCGACGAAGCCGCCCTCGAACAGTACAATCGTGACTATCAAATCGTCTACGAGCATCCTGAACTCGACGGCATTCTCGAAATCACCGTTCCAAACAACTTTGCTAAGGAGAAATTCTATCGCAAAGCTCTCGGCCACTGTTATCAGCTCCGGTTCATCTACACTGACAAAGTCATCAACGTAGACCCAGACCACACTGTCAACAACTGTCTCTATCTCACCAAGATCGCCGATATTCAAGTTTCCGGTAGCTTCTGTAACTACTTCCTCCCCTTCAAGTTCTACACCACGTCCAACGAAAGATGTCACAACTACGTCAGCAATCTCATGGAAATCTATGGTGTCCGCGGAGTTGACCTACCCTTCGGATTCCTAGACAAAGTAGAATGCTCAAACATCGAAGACACCAAGATCGAAATCATCAGCGACAAATGGGGCAACAACACCTACATACATCCTGGCGCTGCACGTGACACATGGGGACACAATGTCATCATGAATGAATACACCACTGAAGGCGAGTTACTTAAGTCTCAGGTATACAACCAGTCTTACTTCACTTTCCTCGGCGGTCGTGTTCACCGTGACAACACCTACTGTCTCGCTCGACCTTACGACACCACCTCTGTCTACATCGCACCCATCTGTTCATCCAGTTCAAATTCTCGTTGGTCCCTCATCTACAACATCCCAATCACCTACTTCAGACACGCACAGACATCCTACTACGACACTCTCGACCATTCCTCTGTCTACAGTCTGATCATCATCATCGTCTCATACTATCTTCTCACGCGATTCTTCGAACCGGTCACTGTCTGCTTCATCTACATTCTCATCACGAATGTCTTCGCACTCATCATCTACCAGTCTCGAGATCTCGCATACATCAGCAGTGTCATCTCAGTGCTCTTTGGAACTCTCACCGAAATCCTCAAGCGCTGTATGGTCATTCCTACTGTCCTCTCCTTCCTCTTCACCATGACTTCTTACTGTAAGAAGGGCTCAATGATGAAGCGTCCACGCGATCACTTCGATATGTTCGTCGCTACATCATTCATGGCCTTCTCTTTGATCAACATCGGCTACATCTTCCTTCTCACCGGAATCGTCATCTTCATTGGACTCTACAAATTCATCGCCGCTCAATTCACTCAACCTCACTGGCGTACCTATGTCAACGTCGCTGTCAGTATTGACGACATCGCTGCCCTCGGTTACACTCAGACCAATCAGGTTAGAAAAGCAGCAGATGATCTCATGAAGAAATCCACCGACGACAAGTACTCCTACTATCAACAGCTCGACTTCTTCGTCCACGCCGCATTCCTCAACGCATACGCCCAAGCAATTGACTCAAAGATCCCACTCAACTTCACTCACCGTAACCTGAACTTCCGTGTTTCACAGCCCAAGACAAACTTCCTTGTCGGTCTCGTCACTCATGAAGTAAACACAGGCAACAACACCAGAGTAGAAGATCTCAACAAGCACCCATACAACAAGTACCGTAGTAATATCGTACGTGTATATGGTGAACGTGGTGATCTCAACGGCTTCCTCAGCGGCAAATTCCTCTACTTCCCTCGTCACATCTTCGACTCCTGTACTGACAACACTCTCACACGACACATCCGCGTCACAAAAGGTGAAGAAACTCATGACATCGAACTGTTGAGCGACGAATATGACGCCACTCCTTTCATCAAAATCGACAGTCCATTCGCAGAAGCAACTGTACTCAAATTCGGTAAACTCCAACGCACCCAGTACGCATACTTCGTTACCGCTGATGACATCAGGGTTGGTTCAATGTCCGTCGACGGCTACCACAACATTTCTACCAAGGATGGTGACTGCGGTTCACTCCTCTTTGACCACCTTCACAATGTTGTTGGAGCTCACATCGTCGGCATTGCTAGCATCCCTCCTGTCAACGGTGCCCTGACCTGGAATGCAGAAAAGGAAATGCTCTGCGGACCAAATGATGACTACGATTACGATCCAGAAAAAGTCGGTCCACCCAAGGTATGGCCTGTAGAATCAATCACTGCTCTCAGCACGATCCTCAATCAGCTCAACTATGTCACCGGTGATGCCTTCACTACACCCAAACTCCCTACAAACTATCAGCTAATTGGTTGCGAGACACTGGACCAGTACGTCAATGCCCGTAATCTCGTTACCGGCCAATTTCCTCAGATCAAGGAGGCACTAGACGATTTCATCAACGGATACGTCGCCAACTTGCAACGAGGTACTGAAGCCTACAACGTAATCTACACCAGCATGAACGCACAGATCCGTATTGCTGACCTCTCTCCTCTCAGCAACTCGATCACCAACTGGCAATACCTCATCGATCCTTTCACTCGATTCCGCTGTTTTATCCTCGGACTCCTCAAGCAGTATCTCCGCCATCTCATCATCTACTTCCTTCTCCAGATCGCTTTCATCTGCTTCGATCACGGTTTCTTCTTCCGTGTATTGAGAGATCCAACCCACTTCCTCTTCTCCATCATCAGCACCGTCTTCATCTCTGTCAGCCCTCTTGCTAGCACGAATGACATCCTCTTTAAGTATCTCCTCAGCTACACTCTTGAATACAGATTCGCATATCTCAACGTCGAAACTCTCATTCAGTCATATCTCTATCTCAGTTCTCGCGAAGCAATCTTCTACACCTCTCGTAGGGTCAACAAGCTCTGCACCGTCTTCACTGTCATAGTCATGCTCCTAATTGACACCTTCTTCGTTGAAATCGGTGGCTACAATGTCCTCCCGGTTCTCATCATCTGTATCCCTATCTTCTACCTCCGCACTGTAATGATGGGAGCTGCACAGATTCAAGTGTATTTCGAAGCTGATCTGCACAAACCTGCTGCAAACTTCATGACTCTCATCTACTTCTTGATCATCAACGCTATCTCTATCATCATCTATTGCTGGGGTCTATTCTCATTCAACGCTCACGCTAACACAATCTTGTTCGCCACTACCATCGTGCACTTCATCGCCTTCTACGTTCTCTCTCAGGAAGTTCAGAAGGTCTTTGAAGCCAACACTTTCCGTGTCCCAAGACTTATCTACGCTGCCATCTCTTACATCTCTCACGTCCTCTGCCACATCTACTCTGCCGCTCTGAACAAAGTTTGCGAATGGATCCTCCAGATCATCATCAACGCTAACCGTCTAGTTCTTATCGGTAGTGGATCTTTTGGCATCTTCCTCACAATCTGTTTCCTCTTCTACTTCTTCAAGCAACGCTCCAACACGGCTAAACACGAATCAAACGACATCGCAGAAGCACACACACACTTCGACTCATTCGCCAAACTCACCACACTCATCGCCAACAATCCCAAGCTCGCTTGTATGAAACCATTCTGCGTCGACTACAATGACAATCGTGCGCGTATGACCCTCAAAGAAAAAGGTAACTGGGTTGTCAAAGTGCGCGACGCTCTCCTCACTCAATTCAGCCTCACCAACCCTGCTGATCTTGCTGAAGTGATCCACGAGTGCGCTAGTCATCCAACTCTGAACAAACTATTCTTCGATAGTCCAAAAGGTCTGAAGGTCTACCATGAAATCGACTCCAAGCTCGATCAAGTCCCGTACAACGGTGAGAGCGACCAGATCAAATCTGATACTGCCGTTCTTGCTGAATACAGGAATGAACTCAACCTAATCGAATGGAAGATAGTCACCTTGCAGAAGGAACTCGCAGAAGCCAAAGCCGCAGAAGAAAGAGATGCGATCAAAGGGATTAACACACAGCTAGCTGACCTCATGAAACAACGCAAAACACTCATCACACTCTCCAACACATTGAATCAGTCTATCATGGCCAGAGATGCTCAGGAACGCCGTGTTGCCAGACGTCACGCAAATGAAGAAGCAAATGAAATTGCTCGCGTGATCAAAGCACAACGACTCCGTGACTCTCTCACTCTCATCTTCAACACATTCATCAACAATCTCATCAAACTGACATCTGACTGCAATGCATTGAAATCATACGCTGACAATGTGCTCAAGTACGTGCCTGAAGAAACTAAGGACTTCCTCAAGCGTGCTGACAATTGTTACCGTCTTTCCCAGGACATGATTCTCATCGAAACTCCTGCCAGCCCTCTCTCTTACTTCAAAGAAAAGAATGGCATCATCGAAGTGATCAACTCCTGCAGCTATGACACCTTCAAGGACGGTATGGTTGTCAATCACATCCTCGACGGCACTACAAAGCTCCCTTACACTCTCGACTCTCTCAAATCCTCTACTCACGTCGTCTGCTATGAGCCAGATCGATCATCCAGCTACACAGACACCTGCAAACATGAGTTGAACTCCAAGGTCGGTCAAACTCTTCCTTGTGGCACATCTCTTGAATGCAATCACTCTCACTACCACAACCAATTCGACTGTACCTCTGGCTACTTCGCTTTCATGGCCCAACATATCACAGAATGTGAGACATGCCTTGACACCTTCAAGCGTGGACAATGTGGTTGCGGATACCGATACAAGGTTCCCCGTGTCCTTCAGTCGTTCATTCTTCATGGCTCGAAATGTTCTCTCGTCACCCACGAACTTAGCTACTCTGGAACTGCCGCAGCTTTCAAACCATACTACGATGAAGCTACGCACAGTATCATGTACAAGTCCGCCGTGATCGCCTATCTCAAGAAGCCAGACACCTACACTAGTACATTCACCTACAACAACGAAACATACTATCTTCCCGTTCCACTCACTCACGACGTTGTCTCTATCCTCATTGCCTTCGCCACACGCAACGGCTCAATTCCGGTCAGCGAGGTTCACTTCGAAGCCTGCTTTGACCGTGTTGACGTCGAAGAAGACAGTGGTCTCCAATCATACTCTCTCATCGATACGCCATGCGCCAATGATGATCAGGTCTGCTACCAGATTCAGACATGTCCATTCCACACCACCAAGAATGACACGTGCATGATCTGCGCAAACATCGACGACGGCATCTACTCTGTCGTTCCAGCCGATTCATCATTCCACGAGCTCGCCAGGGAGCTTTCCATCACTCTCACTAATGTCACCAATCCTCCTCCTAAGAGACATGAGGCAAATTTTCAGACAAAGCCTCGTCGAGTCTTCCAGTAA
Protein
MEPFQVLSLLATSFSLLLLLRILDRGTNVLSAVRLTLRTTFFNESVRRPLYWTSPAKWFNSLGQTTPRMEKRSIKSVKLSSAHGSPYPSVVTLTIIANDAYDARAFYRSNQHATQVILWLGALFNAGQVLCGIVLSLFALTYIMVAKLTTRLRKFLQAVGAIRSENLSCSHFEETHGSKSSVRSSMINLQNLVNRVGPLLPIVTIMCCIPPTDASEITIAPRVTLDTGLSAVSLLITATWLIRHFQTSKVRTNMSTSFGTATGLLIITLLSCITIVSGIPAATPSLAKVGHGMVAPFLLFIVMWLSLRYLITLLLRLFPKQLLKYYTQLDLHLYFLFCYQHYLPDVPLKKAIISHGAYTDHHHTTTKFCNSCVGFGHLDSECSDYTHPIFSYKRYYNIPTKQTIEAYLEVHTQNEIFIHNDITIIRGDLVFINKILKDYDHTTLGSLFPEDFPHLTVRRVDYTPVVNVDGTIRIFPNTKYYNHTEYTLDKESDIDIAHYQTIYRQTTPFKIGYDIPCGIIPHADTTIVHTHGYANGQIEIDTSSAYSDITNLSLRPSTASFSCSLASQMSSATSQTGSITSNSSSISASSANSLAQKSTKDQVFNYMSIRPRRIYDPSNDLAVGILTATLRPNDVHSDALYPVELQYAFPGWTADEIINDENGINMHEYTSCRQETKDFLNMIDPHKFSSHVKSSTTPSFVTLHNGCIWNTSDSIIDIGIASANRPDGVSQRIPDMVNAYNVPPPARRLGSYTKSGRVYCIWGARVNSAPTPCKHVNACNCLDTKYHRYNAFYNAASTIISREQLTTVSLSLNVGCGPLQGDWNTYEQIIFRIANETQCYIRIYMNNETGAHHNPITNQTGKNRKKWHSYRVQETKLPINKTLRSVNVSQAQRRREQTRPAPPTILPPTPPQPDTQEDDDVPQNFVEHCQLFYKQRHDQLINLFSLCLGIIIHQYIYDVMYGLRVIDHTEIFLMSIAFTTTIISLHNYKIISIPSTLAGILVGDNPVTWFCFLIAHKCNVSCSLQILGILNAINPYSAYTGTICLLFYTLSPSTCTSLVRFLLTLLLTVTGAQAQETEQKSDTHLFKQFTRLIVYALCAHIIYTIVKMLEPREEHETIAVSTKQYSNFVSTQRRTTTCSYTQPTTTAVVIAVFLTFTLMVSTANATQIFSRDPSHKFYSYYEPIESCDNPSYIGQIDYDRFWKMPSTFRFPNGMTLEDYLMEEVCYDDSILDLLHPVYVIDGINFEVTQSINCDYHLSVNKTQLTYCLEQRVSEKDMTLMTQAQLKKFALKYRRRADENNTISHTVQTVNIVGITLTYRSNHTYTLPYGSLTCNSEHAYCSYIAKVLGSEHTLPASALQYCHGNEEFCEYKRFDDADLCTLYYRDLTIAPDTDPEDFKLAQQFREHVASLCGIRASIHEAHLNEPKSTPKSRRGEWYSSTLRIANHRSRNGQCIVNVCGSVPADFTDQGIEFEYQFVNDCSPSNTTADCVAIDFAYEFAYSYIHKKVMHNGHVPYISRIVNLIPGIPEAYTRLAAVYNAVVNIPSEEIVDRLYEQFDNTAQLATRRLENIKYVPKIAKMTAEVLFADRIVKKYTLVGIRTLCLARFEESVCKKLIIAVNGFINNDHLIIETDFDKATFTALYHFITKHYKAKYTAPQPVCKFAKNLTPTQRYINDCDVQVELKRCHINFVEGQVDYSRRNVTIIHNIPTSQIDVIFTATGTEYYDSNGHQFAAITDKRFTVNDTTYTLPSDLKLMAQGKNKQSRHWHNYGHRFYNAELIKPGTNRGHMIPSFLGGPAVYANAFLQTIQANLDDTPFENQAIGVTYNKHITSYNPNDIIIGDVADPWCHINPSTQSTPSLPLPHNVSEAEKFILTHDNIFTVTHDHPYHTEDEFKLLRSLALPCGVYSYTISLRGEVVRRWNPSDQTGGKTLLHHPVNTTHIRTWELTTTVLKTALSTIAKLRHPVLQILGLETEFVTSAHPLHIRNTLGSMYTYKHLSYLLPIALRCASGVAVNFGINTPLSNCTLDNGHGIEQSGLPSLEHNTQNFTALNTNIPTTYTLSGDIRDMTCLYNAIRLWADANDYTTSFTDNADITFRFDNTVLPTRCYNYNIPSTHACDSPTYDIPAEDLTYFQQASLAVICREHSNMYCHQLDIDSYPRPSYSEFMDNLIPLTCGTFNATDSVLRCATEHQIIYTPPQEYNTTLEQFRIANMHCPIYIEPTPGILNSSRGIYTYSYQGRVIGSSERIGTTRLPSDILILYKNITEVKFNTGTKLCQSEGNNTLFHNGCNLKVTHGKPASPIYTTYPDRRHDIIQAQLTQDILNTIINATGNLNIMKYRRSTLNLTFPYHPVDINIEQIDGCHVIDEAALEQYNRDYQIVYEHPELDGILEITVPNNFAKEKFYRKALGHCYQLRFIYTDKVINVDPDHTVNNCLYLTKIADIQVSGSFCNYFLPFKFYTTSNERCHNYVSNLMEIYGVRGVDLPFGFLDKVECSNIEDTKIEIISDKWGNNTYIHPGAARDTWGHNVIMNEYTTEGELLKSQVYNQSYFTFLGGRVHRDNTYCLARPYDTTSVYIAPICSSSSNSRWSLIYNIPITYFRHAQTSYYDTLDHSSVYSLIIIIVSYYLLTRFFEPVTVCFIYILITNVFALIIYQSRDLAYISSVISVLFGTLTEILKRCMVIPTVLSFLFTMTSYCKKGSMMKRPRDHFDMFVATSFMAFSLINIGYIFLLTGIVIFIGLYKFIAAQFTQPHWRTYVNVAVSIDDIAALGYTQTNQVRKAADDLMKKSTDDKYSYYQQLDFFVHAAFLNAYAQAIDSKIPLNFTHRNLNFRVSQPKTNFLVGLVTHEVNTGNNTRVEDLNKHPYNKYRSNIVRVYGERGDLNGFLSGKFLYFPRHIFDSCTDNTLTRHIRVTKGEETHDIELLSDEYDATPFIKIDSPFAEATVLKFGKLQRTQYAYFVTADDIRVGSMSVDGYHNISTKDGDCGSLLFDHLHNVVGAHIVGIASIPPVNGALTWNAEKEMLCGPNDDYDYDPEKVGPPKVWPVESITALSTILNQLNYVTGDAFTTPKLPTNYQLIGCETLDQYVNARNLVTGQFPQIKEALDDFINGYVANLQRGTEAYNVIYTSMNAQIRIADLSPLSNSITNWQYLIDPFTRFRCFILGLLKQYLRHLIIYFLLQIAFICFDHGFFFRVLRDPTHFLFSIISTVFISVSPLASTNDILFKYLLSYTLEYRFAYLNVETLIQSYLYLSSREAIFYTSRRVNKLCTVFTVIVMLLIDTFFVEIGGYNVLPVLIICIPIFYLRTVMMGAAQIQVYFEADLHKPAANFMTLIYFLIINAISIIIYCWGLFSFNAHANTILFATTIVHFIAFYVLSQEVQKVFEANTFRVPRLIYAAISYISHVLCHIYSAALNKVCEWILQIIINANRLVLIGSGSFGIFLTICFLFYFFKQRSNTAKHESNDIAEAHTHFDSFAKLTTLIANNPKLACMKPFCVDYNDNRARMTLKEKGNWVVKVRDALLTQFSLTNPADLAEVIHECASHPTLNKLFFDSPKGLKVYHEIDSKLDQVPYNGESDQIKSDTAVLAEYRNELNLIEWKIVTLQKELAEAKAAEERDAIKGINTQLADLMKQRKTLITLSNTLNQSIMARDAQERRVARRHANEEANEIARVIKAQRLRDSLTLIFNTFINNLIKLTSDCNALKSYADNVLKYVPEETKDFLKRADNCYRLSQDMILIETPASPLSYFKEKNGIIEVINSCSYDTFKDGMVVNHILDGTTKLPYTLDSLKSSTHVVCYEPDRSSSYTDTCKHELNSKVGQTLPCGTSLECNHSHYHNQFDCTSGYFAFMAQHITECETCLDTFKRGQCGCGYRYKVPRVLQSFILHGSKCSLVTHELSYSGTAAAFKPYYDEATHSIMYKSAVIAYLKKPDTYTSTFTYNNETYYLPVPLTHDVVSILIAFATRNGSIPVSEVHFEACFDRVDVEEDSGLQSYSLIDTPCANDDQVCYQIQTCPFHTTKNDTCMICANIDDGIYSVVPADSSFHELARELSITLTNVTNPPPKRHEANFQTKPRRVFQ

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5LAK     E-value=0.024     Score=40.0     Identity=25.83%     Cov(Q)=3.70%     Cov(P)=48.09%
3D Structure

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
4076
Number of predicted TMHs:
24
Exp number of AAs in TMHs:
495.275879999998
Exp number, first 60 AAs:
14.19162
Total prob of N-in:
0.07239
POSSIBLE N-term signal
sequence
outside
1  -  3
TMhelix
4  -  23
inside
24  -  115
TMhelix
116  -  138
outside
139  -  222
TMhelix
223  -  245
inside
246  -  256
TMhelix
257  -  279
outside
280  -  288
TMhelix
289  -  311
inside
312  -  939
TMhelix
940  -  957
outside
958  -  971
TMhelix
972  -  990
inside
991  -  996
TMhelix
997  -  1016
outside
1017  -  1025
TMhelix
1026  -  1048
inside
1049  -  1056
TMhelix
1057  -  1074
outside
1075  -  1088
TMhelix
1089  -  1106
inside
1107  -  1146
TMhelix
1147  -  1169
outside
1170  -  2629
TMhelix
2630  -  2652
inside
2653  -  2656
TMhelix
2657  -  2674
outside
2675  -  2677
TMhelix
2678  -  2695
inside
2696  -  2715
TMhelix
2716  -  2738
outside
2739  -  3170
TMhelix
3171  -  3193
inside
3194  -  3199
TMhelix
3200  -  3222
outside
3223  -  3264
TMhelix
3265  -  3287
inside
3288  -  3291
TMhelix
3292  -  3314
outside
3315  -  3328
TMhelix
3329  -  3351
inside
3352  -  3357
TMhelix
3358  -  3377
outside
3378  -  3391
TMhelix
3392  -  3414
inside
3415  -  3426
TMhelix
3427  -  3449
outside
3450  -  4076
 
 
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