CoVDB Coronavirus Database (v3)   
Strain
shrimp_FJ848674 (Region: Thailand;  Strain: Yellow head virus strain YHV1995, complete genome.;  Date: 1995)
Gene
structural glycoprotein
Description
Annotated in NCBI,  structural glycoprotein
Location
FJ848674(+):20984-25984
GenBank Accession
ACS44774.1
 

Sequence

CDS
ATGCAATGTTCGCGATCATTCACCATGCACTTCTCATCCTTTCGCTCCCAGCCATTTTCATCTTCTACTGGGTTGCGGGGCTTATTTCTGACCTTCCTCTTATCTACTTTACTCTCTGGTTCTGGGGTTCATGGCTTCTCTCTACAATTTGCTACTCCCTCACATTCTCTGGACGCAGGCGCAATAAGGACAAATTCTACTATTCTATCAACGTGCAACAACACAATCCGTACAATAAAAGAATCTTGTCATCTAAGTTCGCTTAAGTCTGAGGTCTCCTGCTTTTACGATGAACACATTCATGACATTTCTGCACCAGGCTCGCATATCATTTATACAATTGGTTTTGCTTACCTGAAAACAGATTATGAATGTAAAGAAGGATATCCTCCCGCCAACACCGTCCAACGATACTTCCTTTCTATTTTATACCTTAGCATCTGTTCTCTTCTAGCCTACATTTTCACTAAAATCACTCCTATCGCTAAATCCTTCATCTCTTCATGCTTTCAAACTGAATATATCATGGAAACGACCGAAACTGAAAAAGGCCAAGTGACTGTTGCCCATGATAGACATAAGCTCACACCAACAAGTTGCCATTCTATTCTCAACTCCACTTTCAATCTTCTAGTTATTGGATGTTTCATATTTCTATGCTTCTTCATCACTCCTGCTTTCGCCACGATTCTAGGTGGAATTCCTGCAAAAGACAAGTCAGTCCTCATGGCTCCCCACGTGCTTTTTGAGGCCGGTCAACCAACTGAGCTTTCAGACTGCATCCATTGGGCTGCTAATGGTGACTGTTTCTGCAACTCTACCAACTGCGACTGGAGTGAACACGTTCAAACTCTTTGTCCTCAAACCTGTAACACATCATCTCCCACTACAACTTCTTCTACTACACAATCTCTTCCGTCTTCCACTCCTTCTAGTGACGCCGATAATCCTTGTGTTGCACAGGACGATGCCGGTTGTTACAGCTATCTTAATGACTATGACGAATCAAAACGTACACAAGCCATTAAATACACATACACACTCAGCACAAAGAAAACACCACGTATGAATGCAATCCTAACTACTGAGCAATTTGAAGAAATGTCCTTAGATGAAGCAAGATACTCTGACATTGTATCTTTATACCGAATCAATAACATAACATCAGTCCCTGGCTGTATGTACAATCCAGTATCATACTATCTCCATGGCGACTCTGTTCCTGTTACTTGTCCATCAACACCAAGATCTTTCGGTACAACCTACAATCATCAAATCAGTAGTCAAATTTTGTATAATCACAAAATGGTAAATGTTACAGTAGATCAACGTTGCAAAACACATTCTGATAACTGTTGGGCTTATTATAACAAGGCATCGAAAAGCATTTTTATCCAATTCCATCCCAGCTATGCTCAGAAGTATCATAATAGAACATTAGAGCCCACTACATTAATTATTCCATTCTATCCTCCCAGAGACACTAAAACACTAGCCACACATCTTGGTCCCCGCGTTCTTCGTAATGCCGGTGATTATCAAATTTTCCTTGAACCTGGCTGGCTCGGTAGAACATACCTTGACGGTTATTCTTATCATGAAATTTATGCATCCACACGTCACGATTGCCGTTACAACATGATGTCCGGCGACAATAAGTATGGTACTAACCTCGGAGATGATGTCCTTCATGAGACCATTCCAACTCCCCGCGGTTATACTCCTAGCGTTGTTGTCTGTGGCACTACATTTACATATTATAAATTACATGACTCAGTTAAACTCCAATGGGAAAGCGTTCAATATACCGATATAGAGGACATTCCTGCCGGCTTCCGTGATCCCTATGACTTCTCCGTCGATACTCCATCTGGGCCTGTAACTATCAGTGTTCTGGAAGAGTATCATGACGGAGATTCCATACAGGAGACGGCTCCTAAGCGTTTCTTCATCTACTATCGGATAATGACAGCCCGTCTTACACCCTCACAAGTCGAACATCTTAATCTATCTACACACGCCACAAGTTCCTGGGCAGCTGAAAATTACATAAGTAACTGCTACGTTGTTAGACAGCAATTCGTCAGAAACACTCACCCATTCTCATTTGCTCTTTCTTACATTGACTACAATGTAACAGCTGGTAGTGTTGTTCGATGCAACGAATTCAACATACAAATGGATCTTCTTCTTGCAACCTTTGGTACAGCAACACGTACGTGGGCGGCTGAGTATCGTCATCTGCCACATTTTCTCACCAAGCGCGGTTTCTATCCCCTCGAACCTGTTACCGGTTCTGCAATAGATTACTTAATAGTCGAATACAACGCCCATGCTTCACGTTACTCACATCAGGCAACTTACCATCAATTTGGACATCCAGTTGCTAAAGCTCAAACCCGTCCCGGCGTCTGTCCCACCCCTCGTTCCATACGCTATCAAGGTCTTTGTTATGAAGTAGACTGGTCTGTCCGCTCTCCAACACCACCTATTAGCGGTTATCCTGACATTGGCACCTACACTTCTGGCTACATCTTCAGAGACTATGACTATTATAGATTCAAACCTAAGTTCGGTAACGGTCTATATTTAGGCAAAGTTTCTGCTGCTGCTTCCATCGGCACTTATTCTAAGTGCGGTAAAGCTCAATCCATCAGTCCATACCATGATCACGGTATTAATACTGACCTTGGCACACCGGTTTATGATAGCGCTTGTGACTCCGCAGCTTATACAATCCCAGTAGTCAAATATAATGGACCATACTCTCTTGGCGTTCCTGACGTTAGTTGCGAAATTCACGATGAAACCTTAACATGTGGCACTAACAGCACTTTTAGATTTTCAATTTGTTCCCATAAAATCCCTTATGACGGTCCCCATTCAGTCACATGTATCAATTCTAAAGATAACAAAGTCCATATTGTGAAACAGCCCGGATATTCCTACTATATCGCTGGTGACCCAGGTGCACTTCATATCTCTCACAACAAGCATAAACCTTACACCTCCATTCTCAAAGATCAAATCAACCTCTTCCACTTCTCCTATCTCTACCAGGCAGTAGCTATGCTGTTTGGAAGTCTCGGTTATTTCATCTTCGGTCTCTATGTTACTCTTTTCATCCTCACCACTCTCTGGGCTAACATCAAGTATATCTTCTACGCTAAAACAACCTACCTTGGTTATACCGTGCCTCAACGCTTTATGGCTGGTAAGACCACTGGTTGTAAGATGTGTGGTCTTGACACTAAACATCTCAAGATCCATGCTCGCCATCACAAGATCTACATCCACAGTCCTATGCTCGGTCGAACTTTCTTCCTCTGGTCTCCTATCTATGCTATTCTCCTTCTATCCATTATTTCTCCAGCTTCAGCTCTCGCTCCACGACAGGCACGTGTTAGAGGCTCTCCTGGCACCTTCAAACAAGAACCCGTCATCAAATCAACATCATGCTCTGGTACACAATGCAAAGTTGACCTTGAGTATACAGGTGTTATTCCCATCTATGACGGTGCTCAGTTTACAGCCGATCTTAACATCGAGGGTTATCTTCCAACCACAACTAGTTACATAGTTCGTGACCCCACATACACCTCATCCTGTGCCTATCTCTACACTTCTCTTCCTCCTAAACTCTGCGACGCTCGCATCAATTGGTCTTGCCTTCATACTGGTTCTTGCAAAAATAGCTCCGAATATCTTTTCAAGCCTTTAGGTCAACACACCTCCAACGATTACATTGTTGCTAATCCATCTAATCCTCTTCAATGCGGTCTCTGTCCCCATTCAGCTGATTGTGATACTAAATTTTCACATCTCAACCACGGTTGCGCTACCATCAACGATGGTCACGCTGCAGGTGCCGTTTGGATTTCTGGCGCCGTTGACAGTGACATGATTGCTGTCTTCGAATGCTCAGTTTCCAACATAGCCTTCCAGATCTGTGACCCTGCCACCAATGAATGCGCATCCATCACAACAGATTATAGAAATTACACCGCAGACTTCAAGACAATTAGTTTTAACATCGCTCATCCCCAAGTAGCTAAGACAACATTCAAAGTTGGTGCGCTTTTCACCCAGGGTACAACCCATCCCAAGCATCTCCTCTACGATGTTCCTGGCAAGTACGATGCTCCACCTGGTTCTTTCTTTAGCTATCAAGCTGAGACTGTTCCCACCGGTGCATTTTGTAACAAGAACGCATGGATGTCCCCTGGCCTAGCATCAACAGACATTAAATACAATGGCTTCCCAACATTAGATTATAAACTAAATTTTGCAACTATAAATCAAGCCATTCGCAGCTACGACCCCTTAGGAGCTATAGTTCAATGTAATTACGATCAGACATATATTTCCACTATCACAGCCCGTCAGCAACGTTCACTTCTTCTAAACGGAGTTACTTACACAGATGAGGTAGATGCTCTTTCGTATAGTCTCCTCCTGAATCCGCATCACTGCGATTTCGGAGCCGTGAACATACACTTCGCATATTCCACTACTGCTCATGTTTCTCTAATAGAAGGTGACCCTGACCAACTCTCTTTCGACTGTACAGGCTGTCTTTTCACTAACAACCAAATGCAATGTTCCATCAAAGGTATTGACTCTCACTCTTATCAAATTACTGATTCTCTTAATACTTTCGGCGCTGCAACATGCTCTCATACTAAAGCCGATCATCTCTGTAATTTCACTGCTTCCGCATCTGAGTTCGATCTTAAAGTTAATGGTAAAGCGGTCACTATTACTCCAGTTGTCACACAATGCGACGTCGGGTCTATATCCGACACCATTGTTGGTGCTGCAGGTAATGATGGCTATGGTACCTTCACTCCTTTCGCATTCGGCGGCAAGACATGGGATTACATTCTCAAGTATATTCTATATGGCATCGGCACACCTGTCTTTCTCTTCGCTCTAATTTGCTTGCTACAGTTGCTATCCCACCTATGCACGTCCATGAGAACGAAAGCCAAACGATCCTAG
Protein
MQCSRSFTMHFSSFRSQPFSSSTGLRGLFLTFLLSTLLSGSGVHGFSLQFATPSHSLDAGAIRTNSTILSTCNNTIRTIKESCHLSSLKSEVSCFYDEHIHDISAPGSHIIYTIGFAYLKTDYECKEGYPPANTVQRYFLSILYLSICSLLAYIFTKITPIAKSFISSCFQTEYIMETTETEKGQVTVAHDRHKLTPTSCHSILNSTFNLLVIGCFIFLCFFITPAFATILGGIPAKDKSVLMAPHVLFEAGQPTELSDCIHWAANGDCFCNSTNCDWSEHVQTLCPQTCNTSSPTTTSSTTQSLPSSTPSSDADNPCVAQDDAGCYSYLNDYDESKRTQAIKYTYTLSTKKTPRMNAILTTEQFEEMSLDEARYSDIVSLYRINNITSVPGCMYNPVSYYLHGDSVPVTCPSTPRSFGTTYNHQISSQILYNHKMVNVTVDQRCKTHSDNCWAYYNKASKSIFIQFHPSYAQKYHNRTLEPTTLIIPFYPPRDTKTLATHLGPRVLRNAGDYQIFLEPGWLGRTYLDGYSYHEIYASTRHDCRYNMMSGDNKYGTNLGDDVLHETIPTPRGYTPSVVVCGTTFTYYKLHDSVKLQWESVQYTDIEDIPAGFRDPYDFSVDTPSGPVTISVLEEYHDGDSIQETAPKRFFIYYRIMTARLTPSQVEHLNLSTHATSSWAAENYISNCYVVRQQFVRNTHPFSFALSYIDYNVTAGSVVRCNEFNIQMDLLLATFGTATRTWAAEYRHLPHFLTKRGFYPLEPVTGSAIDYLIVEYNAHASRYSHQATYHQFGHPVAKAQTRPGVCPTPRSIRYQGLCYEVDWSVRSPTPPISGYPDIGTYTSGYIFRDYDYYRFKPKFGNGLYLGKVSAAASIGTYSKCGKAQSISPYHDHGINTDLGTPVYDSACDSAAYTIPVVKYNGPYSLGVPDVSCEIHDETLTCGTNSTFRFSICSHKIPYDGPHSVTCINSKDNKVHIVKQPGYSYYIAGDPGALHISHNKHKPYTSILKDQINLFHFSYLYQAVAMLFGSLGYFIFGLYVTLFILTTLWANIKYIFYAKTTYLGYTVPQRFMAGKTTGCKMCGLDTKHLKIHARHHKIYIHSPMLGRTFFLWSPIYAILLLSIISPASALAPRQARVRGSPGTFKQEPVIKSTSCSGTQCKVDLEYTGVIPIYDGAQFTADLNIEGYLPTTTSYIVRDPTYTSSCAYLYTSLPPKLCDARINWSCLHTGSCKNSSEYLFKPLGQHTSNDYIVANPSNPLQCGLCPHSADCDTKFSHLNHGCATINDGHAAGAVWISGAVDSDMIAVFECSVSNIAFQICDPATNECASITTDYRNYTADFKTISFNIAHPQVAKTTFKVGALFTQGTTHPKHLLYDVPGKYDAPPGSFFSYQAETVPTGAFCNKNAWMSPGLASTDIKYNGFPTLDYKLNFATINQAIRSYDPLGAIVQCNYDQTYISTITARQQRSLLLNGVTYTDEVDALSYSLLLNPHHCDFGAVNIHFAYSTTAHVSLIEGDPDQLSFDCTGCLFTNNQMQCSIKGIDSHSYQITDSLNTFGAATCSHTKADHLCNFTASASEFDLKVNGKAVTITPVVTQCDVGSISDTIVGAAGNDGYGTFTPFAFGGKTWDYILKYILYGIGTPVFLFALICLLQLLSHLCTSMRTKAKRS

Summary

Uniprot
F2Q6W9   F2Q6X3   A1Z0M2   B3U1H7   C6GFB0   B9UYP8   + More
A0A1S6GXF7   B6SCR1   A0A0U2KCJ7   Q8JNK9   B6SCR3  
Pubmed
20554800    12180709    12655087    16213055    18582978    19409902    + More
19049843    28044194    18768192    10399042    10811931    11907343   
EMBL
FJ848674    KT316278    ACS44774.1    ALS03976.1    FJ848675    ACS44778.1    + More
EF156405    KT316282    ABM30183.1    ALS03982.1    EU487200    ACA21301.1    FJ848673    ACS44769.1    FJ194949    ACM24270.1    KX947267    AQS27934.1    EU785042    ACI49541.1    KT316279    ALS03978.1    AF227196    AAK84670.1    EU785043    ACI49543.1   
Proteomes
UP000281268    UP000000402   
ProteinModelPortal
F2Q6W9   F2Q6X3   A1Z0M2   B3U1H7   C6GFB0   B9UYP8   + More
A0A1S6GXF7   B6SCR1   A0A0U2KCJ7   Q8JNK9   B6SCR3  

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1666
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
134.293400000001
Exp number, first 60 AAs:
21.38655
Total prob of N-in:
0.96215
POSSIBLE N-term signal
sequence
inside
1  -  23
TMhelix
24  -  46
outside
47  -  137
TMhelix
138  -  155
inside
156  -  207
TMhelix
208  -  230
outside
231  -  1027
TMhelix
1028  -  1050
inside
1051  -  1106
TMhelix
1107  -  1129
outside
1130  -  1630
TMhelix
1631  -  1653
inside
1654  -  1666
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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