Strain

Feline_FJ938051 (Region: USA: California; Strain: Feline coronavirus RM, complete genome.; Date: 28-Jan-02)

Gene

non-structural protein 7a

Description

Annotated in NCBI, non-structural protein 7a

Location

FJ938051(+):28029-28334

GenBank Accession

ACT10861.1

Full name

Non-structural protein 7a

Alternative Name

11 kDa protein
Accessory protein 7a

Sequence

CDS

ATGCTCGTTTTCCTCCATGCTGTACTTGTTACAGTTTTAATCTCACTACTAATTGGTAGAATCCAATTACTGGAAAGGTTATTACTCAGTCATCTGCTTAATCTTACGACAGTCAGTAATGTTTTAGGTGTGCCTGACAGTAGTCTGCGTGTAAATTGTTTGCAACTTTTGAAGCCAGACTGTCTTGATTTTAACATTCTACATAGAATTTTAGCAGAAACCAGATTACTAGTAGTAGTACTGCGAGTGATCTTTCTAGTTCTTCTAGGGTTTTCCTGCTATACATTGTTAGGTACATTATTTTAA

Protein

MLVFLHAVLVTVLISLLIGRIQLLERLLLSHLLNLTTVSNVLGVPDSSLRVNCLQLLKPDCLDFNILHRILAETRLLVVVLRVIFLVLLGFSCYTLLGTLF

Summary

Similarity

Belongs to the coronaviruses ns7/ns7a protein family.

Keywords

Host membrane Membrane Reference proteome Signal Transmembrane Transmembrane helix

Feature

chain Non-structural protein 7a

Uniprot

P19742

Pubmed

3201747 16033972

EMBL

M23694 DQ010921 AY994055

Proteomes

UP000000835 UP000140386

Pfam

PF02398 Corona_7

Interpro

IPR003449 Corona_7

ProteinModelPortal

P19742

Ontologies

KEGG

vg:10040187

GO:0016021 C:integral component of membrane
GO:0033644 C:host cell membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

From Uniprot

Host membrane

Topology

Length:

101

Number of predicted TMHs:

Exp number of AAs in TMHs:

44.99806

Exp number, first 60 AAs:

22.39772

Total prob of N-in:

0.81185

POSSIBLE N-term signal

sequence

inside

1 - 1

TMhelix

2 - 24

outside

25 - 77

TMhelix

78 - 100

inside

101 - 101