Strain
Feline_FJ938061
(Region: USA: California; Strain: Feline coronavirus UU3, complete genome.; Date: 10-Mar-98)
Gene
non-structural protein 3c
Description
Annotated in NCBI,
non-structural protein 3c
Location
GenBank Accession
Sequence
CDS
ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTAATCAACATGTGATTGTTAACAACACACCACATGTCAATTCTATAGTACAACAACATCATGTTGTTAGTGCTAGTATTAAAAGTTTCCATTTAGAGTTCAGCATTGCTGTGCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGTCTGTGTCAGTGTCTTAATGTTTAAGATAATATCAATGACACTTATAGGACCTATGCTCATAGCATTTGGTTACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCGTTTACTTAGCATACTTTTGGTATGTTAATAGTAGATTTGAATTCATTTTATACAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTATATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTGGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAGCTTCTCAATGGTGATTTTATATATATATTTTCAYAGGAAGCCGTGGTCGGAGTTTACAATGCAGCCTTTTCTCAGGCGGTTATAAACGAAATTGATTTAAAAGAAGAAGAAGAGCGTGTCTATGATGTTTCCTAG
Protein
MIGGLFLNTLSFIVTNQHVIVNNTPHVNSIVQQHHVVSASIKSFHLEFSIAVLFVLFLALYRSTNFKVCVSVLMFKIISMTLIGPMLIAFGYYIDGIVTTTVLALRFVYLAYFWYVNSRFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSXEAVVGVYNAAFSQAVINEIDLKEEEERVYDVS
Summary
Uniprot
EMBL
Proteomes
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
237
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
94.78414
Exp number, first 60 AAs:
20.65302
Total prob of N-in:
0.14987
POSSIBLE N-term signal
sequence
outside
1 - 43
TMhelix
44 - 61
inside
62 - 67
TMhelix
68 - 90
outside
91 - 93
TMhelix
94 - 116
inside
117 - 237
