Strain
Bat_GQ153541
(Region: China: Hong Kong; Strain: Bat SARS coronavirus HKU3-6, complete genome.; Date: 16/12/2005)
Gene
nucleocapsid phosphoprotein
Description
Annotated in NCBI,
nucleocapsid phosphoprotein
Location
GenBank Accession
Full name
Nucleoprotein
Alternative Name
Nucleocapsid protein
Sequence
CDS
ATGTCTGATAATGGACCCCAAAGTCAACGTAGTGCCCCCCGCATTACATTTGGTGGACCCGCAGATTCAAATGACAATAACCAGGATGGAGGACGCAGTGGTGCACGGCCAAAACAGCGCCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGCAAAGAGGAACTTAGATTCCCTCGAGGCCAGGGCGTTCCAATCAACACCAATAGTGGTAAAGATGACCAAATTGGCTACTACCGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGCAAAATGAAAGAGCTCAGCCCCAGATGGTATTTCTATTACCTAGGAACTGGCCCAGAAGCTTCACTTCCCTATGGCGCTAATAAAGAAGGCATCGTATGGGTCGCAACTGAGGGAGCCTTGAATACACCGAAAGATCACATTGGCACCCGCAACCCTAATAACAATGCTGCCATCGTGCTACAACTTCCTCAAGGAACAACATTGCCAAAAGGCTTCTACGCAGAGGGGAGCAGAGGTGGCAGTCAATCTTCATCTCGCTCCTCATCACGTAGTCGCGGTAATTCAACAAATTCAACTCCTGGCAGCAGTAGGGGAAGTTCTCCTGCTCGATTGGCTAGCGGAGGTGGTGAAACTGCCCTCGCGCTATTGCTGCTAGACAGATTGAATCAGCTTGAGAGCAAAGTTTCTGGTAAAGGCCAACAACAACCAGGCCAAACCGTCACTAAGAAATCTGCTGCTGAGGCATCGAAGAAGCCTCGCCAAAAACGTACTGCTACTAAACAGTACAACGTCACTCAAGCATTTGGGAGACGTGGTCCAGAGCAAACCCAAGGAAACTTTGGGGACCAAGAACTAATCAGACAAGGAACTGATTACAAACATTGGCCGCAAATTGCACAATTTGCTCCAAGTGCCTCTGCATTCTTCGGAATGTCACGCATTGGCATGGAAGTCACACCTTCGGGAACATGGCTGACTTATCATGGAGCCATCAAATTGGATGACAAAGATCCACAATTCAAAGACAACGTCATACTGCTGAACAAGCACATTGACGCATATAAAACATTCCCACCAACAGAGCCTAAAAAGGACAAAAAGAAAAAGACTGATGAAGCTCAGCCTTTACCGCAGAGACAAAAGAAGCAGCCCACTGTGACTCTTCTTCCTGCGGCTGACATGGATGATTTCTCCAGACAACTTCAACATTCCATGAGTGGAGCTTCTGCTGATTCTACTCAGGCATAA
Protein
MSDNGPQSQRSAPRITFGGPADSNDNNQDGGRSGARPKQRRPQGLPNNTASWFTALTQHGKEELRFPRGQGVPINTNSGKDDQIGYYRRATRRVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANKEGIVWVATEGALNTPKDHIGTRNPNNNAAIVLQLPQGTTLPKGFYAEGSRGGSQSSSRSSSRSRGNSTNSTPGSSRGSSPARLASGGGETALALLLLDRLNQLESKVSGKGQQQPGQTVTKKSAAEASKKPRQKRTATKQYNVTQAFGRRGPEQTQGNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGMEVTPSGTWLTYHGAIKLDDKDPQFKDNVILLNKHIDAYKTFPPTEPKKDKKKKTDEAQPLPQRQKKQPTVTLLPAADMDDFSRQLQHSMSGASADSTQA
Summary
Function
Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication.
Subunit
Homooligomer. Both monomeric and oligomeric forms interact with RNA. Interacts with protein M. Interacts with NSP3; this interaction serves to tether the genome to the newly translated replicase-transcriptase complex at a very early stage of infection.
Similarity
Belongs to the betacoronavirus nucleocapsid protein family.
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF00937
Corona_nucleoca
ProteinModelPortal
PDB
1SSK
E-value=1e-91 Score= 273 Identity=97.73%
Cov(Q)=31.35% Cov(P)=83.54%
3D Structure
Ontologies
GO
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
From Uniprot
Host Golgi apparatus
Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding. With evidence from 1 publications.
Host endoplasmic reticulum-Golgi intermediate compartment Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding. With evidence from 1 publications.
Virion Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding. With evidence from 1 publications.
Host endoplasmic reticulum-Golgi intermediate compartment Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding. With evidence from 1 publications.
Virion Located inside the virion, complexed with the viral RNA. Probably associates with ER-derived membranes where it participates in viral RNA synthesis and virus budding. With evidence from 1 publications.
Topology
Length:
421
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01117
Exp number, first 60 AAs:
0.00017
Total prob of N-in:
0.01022
outside
1 - 421
