Strain

Canine_GQ477367 (Region: Taiwan; Strain: Canine coronavirus strain CCoV/NTU336/F/2008, complete genome.; Date: 8-Nov)

Gene

non-structural protein 7a

Description

Annotated in NCBI, non-structural protein 7a

Location

GQ477367(+):28137-28442

GenBank Accession

ADB28914.1

Full name

Non-structural protein 7a

Alternative Name

11 kDa protein
Accessory protein 7a

Sequence

CDS

ATGCTAGTTTTCCTCCATGCTGTATTTATTACAGTTTTAATCTTACTACTAATTGGTAGACTCCAATTATTAGAAAGATTATTACTTAATCATTCACTCAATCTTAAAACTGTCAATAATGTTTTAGGTGTGACTGACACTGGTCTGAAAGTAAATTGCTTACAGCTTTTGAAACCAGACTGTCTTGATTTTAACATCTTACATAGGAGTTTGGCAGAAACCAGATTACTAAAAGTAGTACTTCGAGTAATCTTTCTAGTTTTACTAGGGTTTTGCTGCTACAGATTGTTAGTCACATTAATTTAA

Protein

MLVFLHAVFITVLILLLIGRLQLLERLLLNHSLNLKTVNNVLGVTDTGLKVNCLQLLKPDCLDFNILHRSLAETRLLKVVLRVIFLVLLGFCCYRLLVTLI

Summary

Similarity

Belongs to the coronaviruses ns7/ns7a protein family.

Keywords

Host membrane Membrane Reference proteome Signal Transmembrane Transmembrane helix

Feature

chain Non-structural protein 7a

Uniprot

P19742

Pubmed

3201747 16033972

EMBL

M23694 DQ010921 AY994055

Proteomes

UP000000835 UP000140386

Pfam

PF02398 Corona_7

Interpro

IPR003449 Corona_7

ProteinModelPortal

P19742

Ontologies

KEGG

vg:10040187

GO:0016021 C:integral component of membrane
GO:0033644 C:host cell membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

From Uniprot

Host membrane

Topology

Length:

101

Number of predicted TMHs:

Exp number of AAs in TMHs:

42.20945

Exp number, first 60 AAs:

22.06991

Total prob of N-in:

0.89451

POSSIBLE N-term signal

sequence

inside

1 - 1

TMhelix

2 - 24

outside

25 - 78

TMhelix

79 - 98

inside

99 - 101