CoVDB Coronavirus Database (v3)   
Strain
Avian_GQ504723 (Region: USA;  Strain: Infectious bronchitis virus strain Georgia 1998 Vaccine, complete genome.;  Date: 1998)
Gene
spike
Description
Annotated in NCBI,  spike
Location
GQ504723(+):20374-23853
GenBank Accession
ADP06492.1
 

Sequence

CDS
ATGTTGGGCAAGTCACTGTTTATAGTGACTCTTTTGTTAGCACTATGTGAGGGTGGTTTAGTAGGTGTAAATTACACCTACTACTACCAAAGTAGATACAGGCCTCCTAATGGCTGGCACATGCAAGGAGGCGCTTATAAAGTTGTTAATAAAACTACTATTAGTTACACAAGCCAAGAGTGTACTATAGGTGTGATTCGAGGTGGTGTTACTATTAATCAGAGTGCAATCGCATTTACATCAGCAACTGGAAGGGTAGGTGTAAAGAAAGGCGTTTGTACTGTATACTGTAATTATACAAGTTTTTATGTTTTTGTGACACACTGTGGTGGAACTGGTCATAATTGCATAGTTAATACAAAAAAGCTTGGTGTGCTTGTCTTTGGTGTCAAAAACTATAACGACCAGTTTATTTATAATATAACACTTAACGCTGCCGGTCCTTATGCAAATTTTAAGGCATGGCAGTGTTTAAGTAATTATACTAGTGTTTTCTTAAATGGCAACCTCCTTTATACTTCTAATTATACAGAAGATGTTAAAGCAGCAGGTGTCTATGCAAAGCAAGTTAATGGTTTAGAACGCAGAGTTATGCGAGATACACCTGTTATGGCATATTTTGTGAATGGCACAGTGCAAGATGTCATACTATGTGATGACAGTCCTAAAGGTAGATTGGCTTGTCAGTATAATACTGGTAATTTCTCAGATGGTTTATACCCTGTTTATGAAGAACCTGTAGCTAGTAATTTTACTTTTGTACCGCTTCATACTTCTTCTACTAGCTATGGTGTTTTGCATAATTTTACTTTTAATAATGTTACTGGTGTAGCGCCTAATCAAGAACACATTGCTAGGTTTAACATTAGTACTATTTCTGAAGGCTATGTTAATTTTAAATTTAATTTTCTGAATAGTTTTACTTATGTAGAATCTGATTTTGATAGAGGTTCTTATTATGGTAAGCCAGGTAGTAGGTGTAATTTTGGGCTAGAGTCTATTAATAGAGGCCTTAGTTTTAATTCACTTACTGTATCCATTGGTTATGGACCTATATCAGGTGGTTGCAAACAATCTGTTTGGAAAAATGAGGCAACATGTTGTTTTGCTTATAAATACAATGGTGGTTCTCGTAATTGTAAAGGTCTTTACACTTTTGATAGGGATGTTAATTATGAGTGTGTACTTTTAGTTTTTATTAGTAAGCCTGATGGTTCAAGAATTAGAACTGCCACATCCCCTCCTGTTTATAGTAATAATAATGTTAATATTAATTTGGGTTTGTGTGTTGATTATAATGTTTATGGTATTACTGGCAGAGGACTTATTACTAATATTACTGAGTCCGTTCATCCAGGTTATTTAGACCATGGTGGTTTGGTTTTGCTAGATGCTACAGGTTCCATAGACACTTTTGTTTTACATAGTGACAAGCTAACCAGTTATTATAAAGTTAATCCTTGTAGCGACATTAATGAACAGTATGTGGTTTCAGGGGGAAATTTAGTTGGTAAACTTACTTCTAATAATCAGACTGTTGCTCAGCAGTTGGGCGACATGTTTTATGTTAAATTCAGTACTAGTGGCCGTAGAATTAGAAGGGCCACTAGTGAAAATGTTACATCTTGTCCATATGTAACTTATGGAAAATTTTGTATTAAACCAGATGGTGACATTTCAAATATTGTGCCAGAAGAAGTTAAAGATTATACATCTCTTTTGCTTAATAGGACTGATTATGTACTTATACCCAACAGTTTTAATTTAACTGTTACAGATGAGTTTATACAGACTCAATTTCAAAAGATTCAAATTAATTGCATTCAATACGTGTGTGGAAGTTCTATTCAATGCAAGCAATTGTTTCAACAGTATGGTTCTGTTTGTGGTAACATACTTTCTATCGTGAATGGCATAGCATTACAAGATAATGCTGAAATGCTCCACTTTTATTCTTCTACTAAGCCTAGAGGTTTTGATACAAACTCATTTGTTAATTTTACAGCAGGTGAGTTTAATATCTCTCTTGTATTACCTAAGAATGGACAACCAACAGGGCGGTGTTTGATAGAGGATTTGTTGTTTGATAAAGTAGAATCACTTGGATTACCTGGTGACTCTGCTTACCAAAAATGTACATCTGGACCTCTAGGTTTTGTTAAAGACTTAGTGTGTGCGCAGAATTATAATGGGTTACTTGTATTACCTCCCATTATAACTGCGGAAATGCAAACTTTGTATACTAGTTCTCTAGTAGTCTCAATGGCTTTTGGTGGAATTACAGCTGCGCGAGCAATACCTTTTGCCACTCAAATTCAAGCGCGCATAAATCATCTTGGTATTACTCAGACAGTTTTGCAGAAGAATCAGGAGAAAATTGCTGCATCGTTCAATAAAGCTATGAAACATATGCAGGATGGTTTTTCAGCTACATCTCTTGCACTACAACAAGTGCAAGATGTTGTTAATGAACAGGGTGCAATTCTCCAGCAGACTATGCATTCACTTAATAAAAATTTTGGTGCCATATCACATGTCATACAAGATATTTATAAACAACTAGATGCATTAGAAGCAAATGCACAGGTTGATCGCATAATTACTGGCAGGCTTTCTTCTTTATCAGTTTTAGCATCTGCTAAACAATTAGAGTACACTAAAGTTTCCCAGCAACGTGAATTGGCTAAAGAAAAAATTAATGAGTGTGTAAAGTCACAGTCTAATAGACATGGTTTTTGTGGAGAAGGCATGCATATCATGTCTATCCCCCAGAACGCACCTAATGGAATTGTCTTTTTGCATTTCACCTACACCCCTGAAACATATGCAAATGTGACAGCAGTTGTAGGTTTTTGTGTAAAACCAGGCAATGGTACTGAATATGGACTTGTGCCTGTAGTAGGCAGAGGCATTTTTATAGAAGTAAATGGTACCTATTATATCACAGGACGTGATATGTATAGCCCACGAGCCATTACAGCAGGAGATGTAGTTAAACTGACACCATGCCAGGCTAACTACCAAAGCATTAATAGAACAGTCATCACTACATTTGTAGATGAAGATGACTTTGATTTTGATCATGAGTTGTCTAAATGGTGGAATGAAACTAGTCGTGATTTTCCCAATCTCGATGAATTCAATTACACTATTCCAGTATTAAATATTAGTAATGAGATTGACAAGATTCAGGAAGTTATACAGGGCCTTAATGACTCTATAATAGACCTTGAAACACTATCAATACTCAAAACTTATATTAAATGGCCTTGGTATGTGTGGCTAGCCATATTCTTCGCCATTATTATATTCATCCTAATATTAGGGTGGGTGTTTTTCATGACTGGTTGTTGTGGTTGTTGTTGTGGATGCTTTGGCATTATTCCTCTAATGAGCAAGTGTGGTAAGAAATCTTCTTATTACACGACTTTTGATAATGATGTGGTAACTGAACAATACAGACCTAAAAAGTCTGTTTAA
Protein
MLGKSLFIVTLLLALCEGGLVGVNYTYYYQSRYRPPNGWHMQGGAYKVVNKTTISYTSQECTIGVIRGGVTINQSAIAFTSATGRVGVKKGVCTVYCNYTSFYVFVTHCGGTGHNCIVNTKKLGVLVFGVKNYNDQFIYNITLNAAGPYANFKAWQCLSNYTSVFLNGNLLYTSNYTEDVKAAGVYAKQVNGLERRVMRDTPVMAYFVNGTVQDVILCDDSPKGRLACQYNTGNFSDGLYPVYEEPVASNFTFVPLHTSSTSYGVLHNFTFNNVTGVAPNQEHIARFNISTISEGYVNFKFNFLNSFTYVESDFDRGSYYGKPGSRCNFGLESINRGLSFNSLTVSIGYGPISGGCKQSVWKNEATCCFAYKYNGGSRNCKGLYTFDRDVNYECVLLVFISKPDGSRIRTATSPPVYSNNNVNINLGLCVDYNVYGITGRGLITNITESVHPGYLDHGGLVLLDATGSIDTFVLHSDKLTSYYKVNPCSDINEQYVVSGGNLVGKLTSNNQTVAQQLGDMFYVKFSTSGRRIRRATSENVTSCPYVTYGKFCIKPDGDISNIVPEEVKDYTSLLLNRTDYVLIPNSFNLTVTDEFIQTQFQKIQINCIQYVCGSSIQCKQLFQQYGSVCGNILSIVNGIALQDNAEMLHFYSSTKPRGFDTNSFVNFTAGEFNISLVLPKNGQPTGRCLIEDLLFDKVESLGLPGDSAYQKCTSGPLGFVKDLVCAQNYNGLLVLPPIITAEMQTLYTSSLVVSMAFGGITAARAIPFATQIQARINHLGITQTVLQKNQEKIAASFNKAMKHMQDGFSATSLALQQVQDVVNEQGAILQQTMHSLNKNFGAISHVIQDIYKQLDALEANAQVDRIITGRLSSLSVLASAKQLEYTKVSQQRELAKEKINECVKSQSNRHGFCGEGMHIMSIPQNAPNGIVFLHFTYTPETYANVTAVVGFCVKPGNGTEYGLVPVVGRGIFIEVNGTYYITGRDMYSPRAITAGDVVKLTPCQANYQSINRTVITTFVDEDDFDFDHELSKWWNETSRDFPNLDEFNYTIPVLNISNEIDKIQEVIQGLNDSIIDLETLSILKTYIKWPWYVWLAIFFAIIIFILILGWVFFMTGCCGCCCGCFGIIPLMSKCGKKSSYYTTFDNDVVTEQYRPKKSV

Summary

Uniprot
A0A0K1RMX2  
EMBL
KR902510    AKV63205.1   
Proteomes
UP000151562   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A0K1RMX2  
PDB
6CV0     E-value=0.0     Score=1272     Identity=60.70%     Cov(Q)=90.68%     Cov(P)=95.11%
3D Structure

Ontologies

GO
GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1159
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
51.6528199999999
Exp number, first 60 AAs:
21.13453
Total prob of N-in:
0.83468
POSSIBLE N-term signal
sequence
inside
1  -  6
TMhelix
7  -  29
outside
30  -  1090
TMhelix
1091  -  1113
inside
1114  -  1159
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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