Strain
Civet_HM245925
(Region: USA: Wisconsin; Strain: Mink coronavirus strain WD1127; Date: 1998/1/1)
Gene
non-structural protein 7a
Description
Annotated in NCBI,
non-structural protein 7a
Location
GenBank Accession
Full name
Non-structural protein 7a
Alternative Name
11 kDa protein
Accessory protein 7a
X3 protein
Accessory protein 7a
X3 protein
Sequence
CDS
ATGCTAGTATGTCTGCATGTTGTCCTGGTTCTAGTATTAATATGCTTGATTTTGAAGCGTATTAAATTACTAGAGCAGTTAGTTCTTAATGCCATTCTCAATTTAACTACACTAACTAACGTGCTTGATATAGCCGATAGTGGTGTGAAAGTTAAATATTTTCAATTGTTAAAACCTGACTGTCTAGATCTTTATAGTTTGCAGCGTGCCATTGTTGAAGTGCGCCTTCTTAGACTGTTTATTAGGGTTTTATTCTTTATTGTGCTATTCTATCTCATTGTATGCGTTTTAATCTGA
Protein
MLVCLHVVLVLVLICLILKRIKLLEQLVLNAILNLTTLTNVLDIADSGVKVKYFQLLKPDCLDLYSLQRAIVEVRLLRLFIRVLFFIVLFYLIVCVLI
Summary
Similarity
Belongs to the coronaviruses ns7/ns7a protein family.
Keywords
Host membrane
Membrane
Signal
Transmembrane
Transmembrane helix
Feature
chain Non-structural protein 7a
Uniprot
Pubmed
EMBL
PRIDE
Pfam
PF02398
Corona_7
Interpro
IPR003449
Corona_7
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
From Uniprot
Host membrane
Topology
Length:
98
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
40.56477
Exp number, first 60 AAs:
20.38334
Total prob of N-in:
0.74085
POSSIBLE N-term signal
sequence
inside
1 - 1
TMhelix
2 - 24
outside
25 - 78
TMhelix
79 - 97
inside
98 - 98
