Strain
Feline_HQ012367
(Region: Netherlands: Utrecht; Strain: Feline coronavirus UU17, complete genome.; Date: 17-Jul-07)
Gene
non-structural protein 7a
Description
Annotated in NCBI,
non-structural protein 7a
Location
GenBank Accession
Full name
Non-structural protein 7a
Alternative Name
11 kDa protein
Accessory protein 7a
Accessory protein 7a
Sequence
CDS
ATGTTCGTTTTCCTCCATGCTGTACTGGTTACAGTTTTAATCTCACTACTAATTGGTAGAATCCAATTACTGGAAAGGTTATTACTCAGTCATCTGCTTAATCTCACAACAGTCAGTAATGTTTTAGGTGTGCCTGACAGTAGTCTGCGTGTATTGAAACCAGACTGCCTTGATTTTAACATCTTACATAGAGTTCTAGCAGAAACCAGATTACTAGTAGTAGTACTGCGAGTGATCTTTCTAGTTCTCCTAGGGTTTTCCTGCTACACGTTGTTAGGTGCATTATTTTAA
Protein
MFVFLHAVLVTVLISLLIGRIQLLERLLLSHLLNLTTVSNVLGVPDSSLRVLKPDCLDFNILHRVLAETRLLVVVLRVIFLVLLGFSCYTLLGALF
Summary
Similarity
Belongs to the coronaviruses ns7/ns7a protein family.
Keywords
Host membrane
Membrane
Reference proteome
Signal
Transmembrane
Transmembrane helix
Feature
chain Non-structural protein 7a
Uniprot
Proteomes
Pfam
PF02398
Corona_7
Interpro
IPR003449
Corona_7
ProteinModelPortal
Ontologies
KEGG
Subcellular Location
From MSLVP
Single-Pass Membrane
From Uniprot
Host membrane
Topology
Length:
96
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
45.59339
Exp number, first 60 AAs:
22.83778
Total prob of N-in:
0.90244
POSSIBLE N-term signal
sequence
inside
1 - 1
TMhelix
2 - 24
outside
25 - 72
TMhelix
73 - 95
inside
96 - 96
