Strain

Feline_HQ392471 (Region: Netherlands: Utrecht; Strain: Feline coronavirus UU20, complete genome.; Date: 23-Aug-07)

Gene

non-structural protein 7a

Description

Annotated in NCBI, non-structural protein 7a

Location

HQ392471(+):28058-28363

GenBank Accession

ADO39846.1

Full name

Non-structural protein 7a

Alternative Name

11 kDa protein
Accessory protein 7a

Sequence

CDS

ATGCTCGTTTTCCTCCATGCTGTATTTGTTACAGTTTTAATCTTATTACTAATTGGTAGAATCCAATTACTGGAAAGGTTATTACTCAGTCATCTGCTTAATCTTACAACAGTCAGTAATGTTTTAGGTGTGCCTGACAGTAGTCTGCGAGTAAATTGCTTACAGCTTTTGAAACCAGACTGTCTTGATTTTAACATCTTACATAAAGTCTTAGCAGAAACCAGATTACTAGTAGTAGTACTGCGAGTGATCTTTCTAGTTCTTCTAGGGTTCTCCTGCTACACATTGTTAGGTGCATTATTTTAA

Protein

MLVFLHAVFVTVLILLLIGRIQLLERLLLSHLLNLTTVSNVLGVPDSSLRVNCLQLLKPDCLDFNILHKVLAETRLLVVVLRVIFLVLLGFSCYTLLGALF

Summary

Similarity

Belongs to the coronaviruses ns7/ns7a protein family.

Keywords

Host membrane Membrane Reference proteome Signal Transmembrane Transmembrane helix

Feature

chain Non-structural protein 7a

Uniprot

P19742

Pubmed

3201747 16033972

EMBL

M23694 DQ010921 AY994055

Proteomes

UP000000835 UP000140386

Pfam

PF02398 Corona_7

Interpro

IPR003449 Corona_7

ProteinModelPortal

P19742

Ontologies

KEGG

vg:10040187

GO:0016021 C:integral component of membrane
GO:0033644 C:host cell membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

From Uniprot

Host membrane

Topology

Length:

101

Number of predicted TMHs:

Exp number of AAs in TMHs:

45.29009

Exp number, first 60 AAs:

22.52335

Total prob of N-in:

0.91487

POSSIBLE N-term signal

sequence

inside

1 - 1

TMhelix

2 - 24

outside

25 - 77

TMhelix

78 - 100

inside

101 - 101