CoVDB Coronavirus Database (v3)   
Strain
Avian_JQ065045 (Region: China: Hong Kong;  Strain: Sparrow coronavirus HKU17 strain HKU17-6124, complete genome.;  Date: 2007)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
JQ065045(+):19334-22954
GenBank Accession
AFD29209.1
 

Sequence

CDS
ATGCAGGGAGCTCTACTGATCACATTTATCGCAGTGGTGACCTCGTCGCCGCTAGCTGATAAAATACTTGATTTTCTAACTTTTCCTGAAGCACATGCCTATCTATTTCCGCAGTCACGCATGGTCAGGAATATAGAGGGCGGTGCTACTGAACGGTGTATGTACGTCCAAGAGGGCGGTTTCATACCAGACAACTTTACATTCCCTCAGTGGTTTGTACTCACCAACGACTCTACATTGCTTCAAGGAGAGTTAACAACGTCGCAGCCGCTAATTGTCAATGGGCACCTTTGCTCATGGCAATCTAACCAACAATATCGAAAATATTCCTTTAACACCTCTTGCCCACTTCCGGCTGACGGTTGTAACCCCACCTGGGGTAGTGGCAATCTTAAGTTGTTTAAGGGATGGAACAACACGAAAGGTCTTACTGACAATATCAGAATTAATGTCAACATATCCCAGTCGGATTATAGGACTTCTGCTGGGTCTGTTGGACTTGAATTAGAAGGAGGTGGTACTGTTAATATTACTTGTACTAACAGTTCCACGCCAGTCACAACATACTCACTACTACCTTGGGCTCGTTCCAGTGGTGAACCAATCTATTGCTTTGCCAATGTTTCATCACCTAGTCAAAGCTATATTGATTTTATGGGCATTCTCCCGCCTTTTGTGTCAGAGATTGCCTTCGATAGGAGTGGCAGTATCTATATTAATGGTTATAGATACTTCAAAATTTCGCCACTACTCAATGTAGAGCTTCAGCTCAACTTCAATCTAACCAGTGACCACTTCTCAGTCACTTGGTCTAATTACACTGAGGTACATTTAAACACTACCAATGGTTATATACATCAGATTAAATACTGCTATGACCCACTTGACAAACTGGCGTGTGAAATGAACACATTCCAATTGCCTGATGGAGTCTATCCATACACGCCCGCTCAACAGCAGGCTTTACCTGAAACATTCGTTACTACACCTGTGTATGCTAATCATACGACTGTTGTAGTACGCACTCAATACACAGTGAGTTCAACCGGAATTAATGGACCACCTTCCTGGTCCACCGTTGAGCTTGATGGTGCCATTAATGACACCCTCTGTGTTAACTCTCGCCAGTTCACTGTACATCTTAACACTACAGTACACTATACCGCTGCACACTTGTTCGGCACGGAATTTGTTGCTGGCACGTGTCCATTCACATTACCAAACATTAACAATTACTTAACGTTTGGTTCCATATGTTTTTCCACTGTTAACAATGGTGGCTGCACTATACATGTTCAAAAAGTGTTGCGACACTATCGCTATACTTTTGGCACTATCTATGTTTCCTATCAACCAGGAAACCAAATAACAGCTATGCCAAAAGCCTCTTCAGGCACTACTGACATATCCACTGTTTATCTTAACGTGTGTACCAAGTATAATATCTATGGTAAAACTGGTACAGGCGTCATTACTAAAACAAATGAAACCCACATTGGAGGACTTTACTACTCCTCCCTTAGTGGTGACTTATTAGCATTTAAAAACTCAACTACACAAACAATTTACAGCATCACACCCTGTGAATTGTCTGCACAAGTTGCTGTATATAATGATTCTATTATTGCAGCATTCACTTCAACAGAGAATTTCACCTTCTCTGATTTCTCTTATAAGCTGAAAACTCCCATGTTCTATTACCACTCAATTGGTAATACGACATGTGAAGCACCAGCTATTACATTTGGTTCTATTGGTGTCTGCCCAGATGGTGGCCTAATTATTCAAAGTGCCACCACCAATGATGTAGACGCTGTAGTGCCTATTTCCACACAGAATATCTCAATACCTATCAACTTCACTGTATCTATTCAGACTGAGTACATACAGATTGAGCACCATCCTATTACGGTGGATTGCAGAAAATATGTTTGCAATGGCAACCCTCGTTGCCTGCAACTACTACTACAATATACTAGTGCGTGTTCAACAATTGAGCAGGCTCTAGCTTTAAATGCGCGACTTGAAGCAGCTAGCATCCAGTCAATGCTCACATACAACCCTCAGACAGTCAAGCTTGCAAACATTACAAACTTTCAGTCTGATGGTATCAAATATGACTTATCCTCCATACTACCTGTGTCAACTGGATCCAGGTCTGCTATTGAGGATTTACTCTTTGATAAAGTTGTCACAAATGGTCTAGGAACAGTAGACCAAGACTATAAAAAGTGTACCAACGGTTATTCCATTGCTGACCTTGTTTGTGCACAATATTATAATGGTATTATGGTACTTCCAGGCGTCGCTGACCCTGAGAAACTAGCCCAGTACACCGCTTCACTTACAGGTGCTATGGTCTTCGGTGGACTCACATCTGCCGCAGCCATACCATTTTCTCTAGCAGTCCAATCGCGTTTGAATTATGTTGCTCTTCAAACGGATGTGCTGCAACGCAACCAACAAATCTTGGCTACATCATTCAATAATGCTATGGGCAATATTACCCAGGCATTCCATGATGTCAACCAAGGACTTTCACAAGTTGCAGGTGCTGTCACCACGATAGCCAATGCATTCACAAAAATTCAGGATGTTGTCAATGCACAGGGCACTGCTCTCTCAACTCTGACAACACAGTTAACAAACAACTTTCAGGCTATCTCAGCCTCTATTGCTGACATTTATAATCGTCTCAACCAAATTGAGGCAGATGCACAAGTAGACAGACTCATTACAGGCAGGTTAGCTGCTCTCAATGCGTTTGTCACACAAACATTAGCTAAACTTGCTGAGGTTAGACAATCTCGCCAGTTAGCTCTTGACAAAGTTAATGAGTGTGTTAAATCGCAATCCGCTCGTTACGGATTTTGCGGCAACGGAACTCATCTTTTCTCATTTTCAAATGCAGCACCGTATGGACTGATGTTTTTCCACACTGTTCTGCTTCCCACACAATACGCCACAGTGCAAGCCTATTCAGGTATTTGCCACCAGAATAGAGCACTTACACTGAGAGACCCATCACTTGCACTCTTCCAGAAAGATGACAAGTATTTAATCACACCACGCAATATGTACCAACCCCGAACTGCCACCAAGGCGGACTTCGTGTACATACAGTCGTGTGACATCACATTCCTCAATCTAACTGACACTACTATTGAAGCCGTCATACCTGATTATGTCGACGTCAATAAAACAATTGAGGAGTTTCTCAACAACTTACCTAACTATACACTGCCAGATCTTTCGATCGACAGGTATAACAACACAATATTAAATCTCACCACTGAGATTGCTGATTTAAATGGTAAAGCTGCCAACCTCTCTCAAATTGTTGAGGAACTTGAGCAGTACATCAAAAACATTAACAGCACACTAGTTGACCTCGAATGGCTCAACCGTGTTGAAACCTACATCAAATGGCCATGGTATATATGGCTTGCCATAGCCCTGGCATTTACTGCATTTGTCGCAATCCTCATAACAATCTTTCTTTGCACTGGTTGCTGTGGAGGGTGCTTTGGTTGTTGCGGAGGTTGTTTTGGCCTTTTCTCAAAGAAGAAAAGGTATACAGACGACCATCCAACACCGTCCTTCAAATTTAAGGAATGGTAG
Protein
MQGALLITFIAVVTSSPLADKILDFLTFPEAHAYLFPQSRMVRNIEGGATERCMYVQEGGFIPDNFTFPQWFVLTNDSTLLQGELTTSQPLIVNGHLCSWQSNQQYRKYSFNTSCPLPADGCNPTWGSGNLKLFKGWNNTKGLTDNIRINVNISQSDYRTSAGSVGLELEGGGTVNITCTNSSTPVTTYSLLPWARSSGEPIYCFANVSSPSQSYIDFMGILPPFVSEIAFDRSGSIYINGYRYFKISPLLNVELQLNFNLTSDHFSVTWSNYTEVHLNTTNGYIHQIKYCYDPLDKLACEMNTFQLPDGVYPYTPAQQQALPETFVTTPVYANHTTVVVRTQYTVSSTGINGPPSWSTVELDGAINDTLCVNSRQFTVHLNTTVHYTAAHLFGTEFVAGTCPFTLPNINNYLTFGSICFSTVNNGGCTIHVQKVLRHYRYTFGTIYVSYQPGNQITAMPKASSGTTDISTVYLNVCTKYNIYGKTGTGVITKTNETHIGGLYYSSLSGDLLAFKNSTTQTIYSITPCELSAQVAVYNDSIIAAFTSTENFTFSDFSYKLKTPMFYYHSIGNTTCEAPAITFGSIGVCPDGGLIIQSATTNDVDAVVPISTQNISIPINFTVSIQTEYIQIEHHPITVDCRKYVCNGNPRCLQLLLQYTSACSTIEQALALNARLEAASIQSMLTYNPQTVKLANITNFQSDGIKYDLSSILPVSTGSRSAIEDLLFDKVVTNGLGTVDQDYKKCTNGYSIADLVCAQYYNGIMVLPGVADPEKLAQYTASLTGAMVFGGLTSAAAIPFSLAVQSRLNYVALQTDVLQRNQQILATSFNNAMGNITQAFHDVNQGLSQVAGAVTTIANAFTKIQDVVNAQGTALSTLTTQLTNNFQAISASIADIYNRLNQIEADAQVDRLITGRLAALNAFVTQTLAKLAEVRQSRQLALDKVNECVKSQSARYGFCGNGTHLFSFSNAAPYGLMFFHTVLLPTQYATVQAYSGICHQNRALTLRDPSLALFQKDDKYLITPRNMYQPRTATKADFVYIQSCDITFLNLTDTTIEAVIPDYVDVNKTIEEFLNNLPNYTLPDLSIDRYNNTILNLTTEIADLNGKAANLSQIVEELEQYIKNINSTLVDLEWLNRVETYIKWPWYIWLAIALAFTAFVAILITIFLCTGCCGGCFGCCGGCFGLFSKKKRYTDDHPTPSFKFKEW

Summary

Uniprot
A0A1L7B908  
EMBL
KY369909    KY674914    KY621348    APT69856.1    ARB07392.1    ARK08620.1    + More
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A1L7B908  
PDB
6U7H     E-value=0.0     Score= 946     Identity=47.54%     Cov(Q)=92.79%     Cov(P)=96.55%
3D Structure

Ontologies

GO
GO:0046813  P:receptor-mediated virion attachment to host cell
 GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0019031  C:viral envelope
 GO:0016021  C:integral component of membrane

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
1206
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
40.65683
Exp number, first 60 AAs:
0.21607
Total prob of N-in:
0.01076
outside
1  -  1144
TMhelix
1145  -  1167
inside
1168  -  1206
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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