CoVDB Coronavirus Database (v3)   
Strain
Avian_JQ065048 (Region: China: Hong Kong;  Strain: Wigeon coronavirus HKU20 strain HKU20-9243, complete genome.;  Date: 2008)
Gene
NS7d protein
Description
Annotated in NCBI,  NS7d protein
Location
JQ065048(+):25752-25952
GenBank Accession
AFD29242.1
 

Sequence

CDS
ATGGCCCAAATAGTTAGAACACCTTTGGAGGCTTCAACTCAGGCTATGACGACTGCATTAGGGTATTCCCAATGTAATTGTGATTGGCAAGAGTCTAAGAAATATCTCAACCTCCTTTGTGTATGTCTAACTCTATCCATTATAACTGTAAGCTTCATTTTTCAGCGCCACGTCTGTGTTGCCTTTGTTGGTCAGACTTAG
Protein
MAQIVRTPLEASTQAMTTALGYSQCNCDWQESKKYLNLLCVCLTLSIITVSFIFQRHVCVAFVGQT

Summary

Uniprot
H9BR33  
Pubmed
22278237   
EMBL
JQ065048    AFD29242.1   
Proteomes
UP000167590   
ProteinModelPortal
H9BR33  

Ontologies

KEGG
vg:11945673    
GO
GO:0016021  C:integral component of membrane

Subcellular Location

From MSLVP
Host nucleus. Host cytoplasm.

Topology

Length:
66
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
20.32365
Exp number, first 60 AAs:
20.30709
Total prob of N-in:
0.94763
POSSIBLE N-term signal
sequence
inside
1  -  34
TMhelix
35  -  54
outside
55  -  66
 
 
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