CoVDB Coronavirus Database (v3)   
Strain
Canine_JQ404409 (Region: USA;  Strain: Canine coronavirus strain 1-71, complete genome.;  Date: presumed 2012)
Gene
3a
Description
Annotated in NCBI,  3a
Location
JQ404409(+):24893-25129
GenBank Accession
AFG19734.1
 

Sequence

CDS
ATGAGTCATTACAGGTCTTGTATGGACATTGTCAAATCTATTGACACATCCGTAGACGCTGTACTTGACGAATTTGATCGCGCATACTTTGCTGTAACTCTTAAAGTAGAATTTAAAACTGGTAAACTACTTGTGTGTATAGGTTCTGGTGATACACTTCTTGAGGCTAAGGACAAAGCGTATGCTAAACTTGGTCTCTCTATTATTGAAGAAGTCAATAGTCATACAGTTGTTTGA
Protein
MSHYRSCMDIVKSIDTSVDAVLDEFDRAYFAVTLKVEFKTGKLLVCIGSGDTLLEAKDKAYAKLGLSIIEEVNSHTVV

Summary

Uniprot
C6GH96  
EMBL
FJ938052    ACT10866.1   
Proteomes
UP000114363   
Pfam
PF04694   Corona_3
Interpro
IPR006784   Coronavirus_Orf3
ProteinModelPortal
C6GH96  

Ontologies

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
78
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00359
Exp number, first 60 AAs:
0.00359
Total prob of N-in:
0.51608
inside
1  -  78
 
 
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