Strain
Human_NL63_JQ765569
(Region: USA: Denver, CO; Strain: Human coronavirus NL63 strain NL63/DEN/2005/232, complete genome.; Date: 18-Jan-05)
Gene
non-structural protein 3
Description
Annotated in NCBI,
non-structural protein 3
Location
GenBank Accession
Sequence
CDS
ATGCCTTTCGGTGGCCTATTTCAACTTACTCTTGAAAGTACTATTAATAAGAGTGTGGCTAATCTCAAATTACCACCTCATGATGTTACTGTCTTGCGTGACAATCTCAAACCTGTTACTACACTTAGTACTATCACTGCTTATTTGTTAGTTAGTTTGTTTGTCACTTATTTTGCTTTATTCAAACCTCTTACTGCTAGAGGTCGTGTTGCTTGTTTTGTTTTAAAACTATTGACACTATTTTTCTATGTGCCTTTATTGGTTCTTTTTGGTATGTATCTTGACAGTTTTATAATTTTTTCTACGCTGTTGTTTCGATTCATACATGTTGGCTATTATGCCTATCTCTATAAAAATTTTTCATTTGTTTTGTTCAATGTTACTAAACTATGCTTCGTTTCAGGCAAGTGTTGGTATCTTGAACAATCATTTTATGAAAATCGTTTTGCTGCTATTTATGGTGGTGACCACTATGTCGTTTTAGGTGGTGAAACTATTACTTTTGTTTCTTTTGATGACCTTTATGTTGCTATTAGAGGTTCTTGTGAAAAGAACCTACAACTTATGCGTAAGGTTGACTTGTATAATGGTGCTGTCATTTACATTTTTGCCGAAGAGCCTGTTGTTGGTATAGTCTACTCCTCTCAACTATACGAAGATGTTCCTTCGATTAATTGA
Protein
MPFGGLFQLTLESTINKSVANLKLPPHDVTVLRDNLKPVTTLSTITAYLLVSLFVTYFALFKPLTARGRVACFVLKLLTLFFYVPLLVLFGMYLDSFIIFSTLLFRFIHVGYYAYLYKNFSFVLFNVTKLCFVSGKCWYLEQSFYENRFAAIYGGDHYVVLGGETITFVSFDDLYVAIRGSCEKNLQLMRKVDLYNGAVIYIFAEEPVVGIVYSSQLYEDVPSIN
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
225
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
79.31211
Exp number, first 60 AAs:
21.30846
Total prob of N-in:
0.00092
POSSIBLE N-term signal
sequence
outside
1 - 38
TMhelix
39 - 61
inside
62 - 69
TMhelix
70 - 92
outside
93 - 96
TMhelix
97 - 116
inside
117 - 225
