Strain
Bat_JQ989271
(Region: China; Strain: Rousettus bat coronavirus HKU10 isolate 175A, complete genome.; Date: 5-Oct)
Gene
non-structural protein NS3
Description
Annotated in NCBI,
non-structural protein NS3
Location
GenBank Accession
Sequence
CDS
ATGACTGGCCTCTTTCAAACTTCTTTTGGTGACTCAGTTCAGGCTGGTGTGCATCATTTAGTTGAAAAACTACCATTACCTGATGCACATTTTCAACATGCATTGCCATTAGCTAATTTTCTCATGACTAGTGTGTTTGTAATTTACTTTGCTATGTACAAAGCCAGCTCAGTTAGAAATAACTGTATTATGCTTGGCTTTAGGCTTTTTGCAATGTTTGTATACGCACCATTGCTATGTTACTTTGAGCTGTATGTTGATGCTGCTATTATTTTTGGTGCTCTTTACACCAGGCTTGTGTATGTTACATATTATGCCTGTAGGTACAGATCACCTGCATTTGTTGTGCTTAACACTGACAAACTTGCTTTTGTTCAAGGCTATTATTGGTACTATCAGGACAACTCATACCTGACTTTGTTAGGTGGTGAAAACTTTGTCACCTTTGGTCCTAATTTTGTGCCAATTGCTGCCACTAATGACCTTTACATTGCTCTCAGAGGTAAGAAAGATGATGATGTACCACTGGTGAGGCGCGTAGAACTCATCAATGGACAATTCTTTTACATCTTTGCACAAGAGCCTGTTGTAGGTGTGGTGAACATGTGCTTTTCTGAACTTAGACTCTGTGAAGAGGTTGAAGTTCAATCTGATTAA
Protein
MTGLFQTSFGDSVQAGVHHLVEKLPLPDAHFQHALPLANFLMTSVFVIYFAMYKASSVRNNCIMLGFRLFAMFVYAPLLCYFELYVDAAIIFGALYTRLVYVTYYACRYRSPAFVVLNTDKLAFVQGYYWYYQDNSYLTLLGGENFVTFGPNFVPIAATNDLYIALRGKKDDDVPLVRRVELINGQFFYIFAQEPVVGVVNMCFSELRLCEEVEVQSD
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
218
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
61.96519
Exp number, first 60 AAs:
21.68178
Total prob of N-in:
0.00411
POSSIBLE N-term signal
sequence
outside
1 - 28
TMhelix
29 - 51
inside
52 - 63
TMhelix
64 - 86
outside
87 - 218
