Strain
Bat_JQ989272
(Region: Hong Kong; Strain: Hipposideros bat coronavirus HKU10 isolate TLC1343A, complete genome.; Date: 10-Aug)
Gene
non-structural protein NS3
Description
Annotated in NCBI,
non-structural protein NS3
Location
GenBank Accession
Sequence
CDS
ATGACTGGCCTATTTCAAACTTCTTTTTGTGACTCAGTTCAGGCTGGTGTGCATCATTTAGTTGAAAAATTACCATTACCTGATGTACATTTTCAACATGCATTGCCATTAGCCAATTTTCTCATGACTAGTGTGTTCGTAATTTACTTTGCCATGTATAAAGCCAGCTCAGTTAGAAATAACTGTATTATGTTTGGCTTTAGGCTATTTGCAATGTTTGTGTACGCACCATTGTTATGTTATTTTGAGCTGTATGTTGATGCCGCTATTATTTTCGGTGCTCTTTACACCAGGCTTGTGTATGTTACGTATTATGCCTGTAGGTACAGATCACCTGCATTTGTTGTGCTTAACACTGACAAACTTGCTTTTGTTCAAGGCTACTATTGGTACTACCAGGACAATTCATACCTGACTTTGTTAGGTGGTGAAAACTTTGTCACCTTTGGTCCTAATTTTGTGCCAATTGCTGCCACTAATGACCTTTACATTGCTCTCAGAGGTAAGAAAGATGATGATGTACCACTGGTGAGGCGCGTAGAACTCATCAATGGACAATTCTTTTACATCTTTGCACAAGAGCCTGTTGTAGGTGTGGTGAACATGTGCTTTTCTGAACTTAGACTCTGTGAAGAGGTTGAAGTTCAATCTGATTAA
Protein
MTGLFQTSFCDSVQAGVHHLVEKLPLPDVHFQHALPLANFLMTSVFVIYFAMYKASSVRNNCIMFGFRLFAMFVYAPLLCYFELYVDAAIIFGALYTRLVYVTYYACRYRSPAFVVLNTDKLAFVQGYYWYYQDNSYLTLLGGENFVTFGPNFVPIAATNDLYIALRGKKDDDVPLVRRVELINGQFFYIFAQEPVVGVVNMCFSELRLCEEVEVQSD
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
218
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
62.12323
Exp number, first 60 AAs:
21.79346
Total prob of N-in:
0.00676
POSSIBLE N-term signal
sequence
outside
1 - 28
TMhelix
29 - 51
inside
52 - 63
TMhelix
64 - 86
outside
87 - 218
