Strain

Human_SARS_JX163927 (Region: USA; Strain: SARS coronavirus isolate Tor2/FP1-10851, complete genome.; Date: 5-Feb-10)

Gene

hypothetical protein sars7a

Description

Annotated in NCBI, hypothetical protein sars7a

Location

JX163927(+):27233-27601

GenBank Accession

AFR58734.1

Full name

SARS_X4 domain-containing protein

Sequence

CDS

ATGAAAATTATTCTCTTCCTGACATTGATTGTATTTACATCTTGCGAGCTATATCACTATCAGGAGTGTGTTAGAGGTACGACTGTACTACTAAAAGAACCTTGCCCATCAGGAACATACGAGGGCAATTCACCATTTCACCCTCTTGCTGACAATAAATTTGCACTAACTTGCACTAGCACACACTTTGCTTTTGCTTGTGCTGACGGTACTCGACATACCTATCAGCTGCGTGCAAGATCAGTTTCACCAAAACTTTTCATCAGACAAGAGGAGGTTCAACAAGAGCTCTACTCGCCACTTTTTCTCATTGTTGCTGCTCTAGTATTTTTAATACTTTGCYTCACCATTAAGAGAAAGACAGAATGA

Protein

MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCXTIKRKTE

Summary

Uniprot

D5HJZ6

Pubmed

20071579

EMBL

GQ153547 ADE34817.1

Proteomes

UP000144982

Pfam

PF08779 SARS_X4

Interpro

IPR014888 SARS_X4
IPR036495 SARS_X4_sf

SUPFAM

SSF117066 SSF117066

Gene 3D

2.60.40.1550

ProteinModelPortal

D5HJZ6

PDB

1YO4 E-value=6e-60 Score= 179 Identity=100.00% Cov(Q)=68.85% Cov(P)=96.55%

3D Structure

View Sequence and Structure Alignments

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:

122

Number of predicted TMHs:

Exp number of AAs in TMHs:

20.78794

Exp number, first 60 AAs:

0.56863

Total prob of N-in:

0.06203

outside

1 - 94

TMhelix

95 - 117

inside

118 - 122