Strain
Feline_KC461237
(Region: USA; Strain: Feline infectious peritonitis virus isolate FCoVWSU791146_P50, complete genome.; Date: 2011)
Gene
putative 3c protein
Description
Annotated in NCBI,
putative 3c protein
Location
GenBank Accession
Sequence
CDS
ATGTTTAAGATTGTATCAATGACACTTGTAGGGCCTATGCTTATAGCATATGGTTACTACATTGATGGCATTGTTACAATAACTGTCTTAGCTTTAAGATTTCTCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTCCGAATTTATTTTATACAATACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTATGAGAAGTTCTCACAGCTCTATTTATGTCACATTGTATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGAATAGCAATACGTGGCTTAGCTCATGCTGATCTAACTGTTTTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATATATGTATTTTCACAGGAGCCCGTAGCCGGTGTTTACAATGCAGCCTCTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAGAAGAAGACCATAACTATGACGTTCCCTAG
Protein
MFKIVSMTLVGPMLIAYGYYIDGIVTITVLALRFLYLAYFWYVNSRSEFILYNTTTLMFVHGRAAPFMRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVRIAIRGLAHADLTVFRAVELLNGDFIYVFSQEPVAGVYNAASSQAVLNEIDLKEEEEDHNYDVP
Summary
Uniprot
EMBL
Proteomes
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
165
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
46.89492
Exp number, first 60 AAs:
28.63846
Total prob of N-in:
0.11082
POSSIBLE N-term signal
sequence
outside
1 - 14
TMhelix
15 - 37
inside
38 - 165
