Strain

Feline_KC461237 (Region: USA; Strain: Feline infectious peritonitis virus isolate FCoVWSU791146_P50, complete genome.; Date: 2011)

Gene

protein 7a

Description

Annotated in NCBI, protein 7a

Location

KC461237(+):28131-28457

GenBank Accession

AGZ84543.1

Full name

Non-structural protein 7a

Alternative Name

11 kDa protein
Accessory protein 7a

Sequence

CDS

ATGAGGTTACGAACTAAACGCATGCTCGTTTTCGTCCATGCTGTACTTGTAACAGCTTTAATCTTACTACTAATTGGTAGAATCCAATTACTAGAAAGGTTGTTACTCAGTCATCTGCTTAATCTTACAACAGTCAGTAATGTTTTAGGTGTGCCTGACAGTAGTCTGCGTGTAAATTGTTTGCAGCTTTTGAAACCAGACTGCCTTGATTTTAATATCTTACATAAAGTTTTAGCAGAAACCAGGTTACTAGTAGTAGTACTGCGAGTGATCTTTCTAGTTCTTCTAGGGTTTTCCTGCTATACATTGTTGGGTGCATTATTTTAA

Protein

MRLRTKRMLVFVHAVLVTALILLLIGRIQLLERLLLSHLLNLTTVSNVLGVPDSSLRVNCLQLLKPDCLDFNILHKVLAETRLLVVVLRVIFLVLLGFSCYTLLGALF

Summary

Similarity

Belongs to the coronaviruses ns7/ns7a protein family.

Keywords

Host membrane Membrane Reference proteome Signal Transmembrane Transmembrane helix

Feature

chain Non-structural protein 7a

Uniprot

P19742

Pubmed

3201747 16033972

EMBL

M23694 DQ010921 AY994055

Proteomes

UP000000835 UP000140386

Pfam

PF02398 Corona_7

Interpro

IPR003449 Corona_7

ProteinModelPortal

P19742

Ontologies

KEGG

vg:10040187

GO:0016021 C:integral component of membrane
GO:0033644 C:host cell membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

From Uniprot

Host membrane

Topology

Length:

108

Number of predicted TMHs:

Exp number of AAs in TMHs:

45.70026

Exp number, first 60 AAs:

22.93242

Total prob of N-in:

0.99509

POSSIBLE N-term signal

sequence

inside

1 - 8

TMhelix

9 - 31

outside

32 - 84

TMhelix

85 - 107

inside

108 - 108