Strain
Murine_KF268338
(Region: USA: Philadelphia; Strain: Murine coronavirus strain MHV/BHKR_lab/USA/icA59_L94P/2012, complete genome.; Date: 25-Oct-12)
Gene
non-structural protein 2a
Description
Annotated in NCBI,
non-structural protein 2a
Location
GenBank Accession
Full name
Non-structural protein 2a
Alternative Name
ns2
Sequence
CDS
ATGTCAAATAAATCTATACTTGTCGTGGCTGTGAAAATGGCCTTTGCTGACAAGCCTAATCATTTCATAAACTTTCCCCTGGCCCAATTTAGTGGCTTTATGGGTAAGTATTTAAAGCTACAGTCTCAACTTGTGGAAATGGGTTTAGACTGTAAATTACAGAAGGCACCACATGTTAGTATTACCCTGCTTGATATTAAAGCAGACCAATACAAACAGGTGGAATTTGCAATACAAGAAATAATAGATGATCTGGCGGCATATGAGGGAGATATTGTCTTTGACAACCCTCACATGCTTGGCAGATGCCTTGTTCCTGATGTTAGAGGATTTGAAGAGTTGCATGAAGATATTGTTGAAATTCTCCGCAGAAGGGGTTGCACGGCAGATCAATCCAGACACTGGATTCCGCACTGCACTGTGGCCCAATTTGACGAAGAAAGAGAAACAAAAGGAATGCAATTCTATCATAAAGAACCCTTCTACCTCAAGCATAACAACCTATTAACGGATGCTGGGCTTGAGCTCGTGAAGATAGGTTCTTCCAAAATAGATGGGTTTTATTGTAGTGAACTGAGTGTTTGGTGTGGTGAGAGGCTTTGTTATAAGCCTCCAACACCCAAATTCAGTGATATATTTGGCTATTGCTGCATAGATAAAATACGTGGTGATTTAGAAATAGGAGACCTACCGCAGGATGATGAGGAAGCGTGGGCCGAGCTAAGTTACCACTATCAAAGAAACACCTACTTCTTCAGACATGTGCACGATAATAGCATCTATTTTCGTACCGTGTGTAGAATGAAGGGTTGTATGTGTTGA
Protein
MSNKSILVVAVKMAFADKPNHFINFPLAQFSGFMGKYLKLQSQLVEMGLDCKLQKAPHVSITLLDIKADQYKQVEFAIQEIIDDLAAYEGDIVFDNPHMLGRCLVPDVRGFEELHEDIVEILRRRGCTADQSRHWIPHCTVAQFDEERETKGMQFYHKEPFYLKHNNLLTDAGLELVKIGSSKIDGFYCSELSVWCGERLCYKPPTPKFSDIFGYCCIDKIRGDLEIGDLPQDDEEAWAELSYHYQRNTYFFRHVHDNSIYFRTVCRMKGCMC
Summary
Similarity
Belongs to the coronaviruses ns2a protein family.
Uniprot
Pubmed
EMBL
Pfam
PF05213
Corona_NS2A
ProteinModelPortal
PDB
4Z5V
E-value=1e-147 Score= 411 Identity=98.51%
Cov(Q)=73.63% Cov(P)=96.63%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.20047
Exp number, first 60 AAs:
0.20047
Total prob of N-in:
0.06393
outside
1 - 273
