Strain

Human_SARS_KF514409 (Region: USA: Nashville, TN; Strain: SARS coronavirus wtic-MB strain SARS/VeroE6_lab/USA/WTic_c2P20/2009, complete genome.; Date: 8-Jul-09)

Gene

non-structural protein 9b

Description

Annotated in NCBI, non-structural protein 9b

Location

KF514409(+):28110-28406

GenBank Accession

AGT21119.1

Sequence

CDS

ATGGACCCCAATCAAACCAACGTAGTGCCCCCCGCATTACATTTGGTGGACCCACAGATTCAACTGACAATAACCAGAATGGAGGACGCAATGGGGCAAGGCCAAAACAGCGCCGACCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACAGCTCTCACTCAGCATGGCAAGGAGGAACTTAGATTCCCTCGAGGCCAGGGCGTTCCAATCAACACCAATAGTGGTCCAGATGACCAAATTGGCTACTACCGAAGAGCTACCCGACGAGTTCGTGGTGGTGACGGCAAAATGA

Protein

MDPNQTNVVPPALHLVDPQIQLTITRMEDAMGQGQNSADPKVYPIILRLGSQLSLSMARRNLDSLEARAFQSTPIVVQMTKLATTEELPDEFVVVTAK

Summary

Uniprot

A0A3Q8AD31

EMBL

KY352407 APO40587.1

Pfam

PF09399 SARS_lipid_bind

Interpro

IPR018542 SARS_lipid-bd
IPR037223 SARS_ORF-9b

SUPFAM

SSF141666 SSF141666

ProteinModelPortal

A0A3Q8AD31

PDB

2CME E-value=3e-48 Score= 147 Identity=86.67% Cov(Q)=91.84% Cov(P)=113.92%

3D Structure

View Sequence and Structure Alignments

Ontologies

Subcellular Location

From MSLVP

Host nucleus. Host cytoplasm.

Topology

Length:

Number of predicted TMHs:

Exp number of AAs in TMHs:

0.00321

Exp number, first 60 AAs:

0.00294

Total prob of N-in:

0.29037

outside

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