Strain
Human_SARS_KF514413
(Region: USA: Nashville, TN; Strain: SARS coronavirus wtic-MB strain SARS/VeroE6_lab/USA/WTic_c1.6P20/2010, complete genome.; Date: 1-Oct-10)
Gene
non-structural protein 7a
Description
Annotated in NCBI,
non-structural protein 7a
Location
GenBank Accession
Full name
SARS_X4 domain-containing protein
Sequence
CDS
ATGAAAATTATTCTCTTCCTGACATTGATTGTATTTACATCTTGCGAGCTATATCACTATCAGGAGTGTGTTAGAGGTACGACTGTACTACTAAAAGAACCTTGCCCATCAGGAACATACGAGGGCAATTCACCATTTCACCCTCTTGCTGACAATAAATTTGCACTAACTTGCACTAGCACACACTTTGCTTTTGCTTGTGCTGACGGTACTCGACATACCTATCAGCTGCGTGCAAGATCAGTTTCACCAAAACTTTTCATCAGACAAGAGGAGGTTCAACAAGAGCTCTACTCGCCACTTTTTCTCATTGTTGCTGCTCTAGTATTTTTAATACTTTGCTTCACCATTAAGAGAAAGACAGAATGA
Protein
MKIILFLTLIVFTSCELYHYQECVRGTTVLLKEPCPSGTYEGNSPFHPLADNKFALTCTSTHFAFACADGTRHTYQLRARSVSPKLFIRQEEVQQELYSPLFLIVAALVFLILCFTIKRKTE
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF08779
SARS_X4
SUPFAM
SSF117066
SSF117066
Gene 3D
ProteinModelPortal
PDB
1YO4
E-value=6e-60 Score= 179 Identity=100.00%
Cov(Q)=68.85% Cov(P)=96.55%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
122
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.16186
Exp number, first 60 AAs:
0.57521
Total prob of N-in:
0.06215
outside
1 - 94
TMhelix
95 - 117
inside
118 - 122
