CoVDB Coronavirus Database (v3)   
Strain
Feline_KF530123 (Region: Netherlands: Utrecht;  Strain: Feline coronavirus strain Felis catus/NLD/UU88/2010, complete genome.;  Date: 17-Aug-10)
Gene
spike protein
Description
Annotated in NCBI,  spike protein
Location
KF530123(+):20251-24654
GenBank Accession
AGT52080.1
 

Sequence

CDS
ATGATATTGTTAATACTTGCGTTAGTCAGCACTGTTACGTCTGAAGACGCTCCTCATGGTGTTACCTTACCGCAATTTAACACCTCCTATAATAATGCAAAGTTTGAACTTAATTTTTACAATTTCTTACAAACTTGGGATATACCACCAGGCACGGAGACTATTCTTGGTGGTTATTTACCATATTGTGGTGACGGTGTTAATTGTGGCTGGTACAATTTTGTTTTCAATACGAGCGTGGGTTCTAATGCCAAGTACTCATATATAAACACACAGAACCTTAACATACCTAATGTTCATGGTGTTTATTTTGATGTACGCGAACACAACTCTGATGGTATTTGGGATACACGCGACCGTATCGGTTTGTTAATTTTAGTGCGTGGAAAATCGCAGTACAGTCTACTTATGGTTTTAGAAGATGATGTGGAAGCTAACGCACCAGATGTTTCTGTTAAAATCTGTAATTGGCGGCACCTTCATGGTAATATAAGTGAGCACCATGAGTGGTCTGCCAGTCTAGGTGATGGTGGTCAATGCGTGTTCAACCGTAGGTTTTCGCTTGATACCACATTGACCGCCAATGACTTTTACGGTTTCCAATGGACTGACACCTATGTCGATGTTTACCTTAGCGGCACTGTCACTAAAGTGTGGATTGAAAATGATTGGGATGTTGTTGAGGCAAGCATCTCTTACAAGTGGAACAAGATTAATTATGGATATTACATCCAATTTGTCAACCGCACCACGTATTATGCTTACAACAATACTGGTGGTTCAAATTATACCCGTTTGCGGCTTAGTGAGTGCAACAGTACTTATTGTGCTGGTTATGCTAAGAATGTCTTTGTGCCAATTGATGGCAAGATACCAGAAAGCTTTTCCTTTAGCAACTGGTTTCTGTTATCAGATAAATCCACTTTAGTTCAAGGACGTGTTCTTAGTAGACAACCTGTTCTTGTACAATGCCTGAGGCCTGTGCCAACGTTGTCTAATAATAGTGCTGTGGCTTCCTTTAATAATGATGCTTTCTGTCCTAATGTCTCAGCTGATGTTTTGAGATTTAATTTGAATTTTAGTGATACTGATGTTTACACGGCTTCAAATAATGATGAACAGTTGTATTTCACATTTGAAGACAATACAACCGCATCCATAGCTTGCTATAGCAGTGCTAATGTTACTGATTTCCAGCCTGCAAATAATAGTGCTTCCCACATTCCTTTTGGTAAAACGATGCATTCTTATTTCTGTTTTGCCAATTTTTCTCATTCTGTTGTGAGCAGACAATTTTTAGGCATATTACCACCAACTGTAAGAGAGTTAGCTTTTGGTAGGGATGGTTCCATCTTTGTTAATGGTTACAAATATTTTAGTCTACCACCTATTAAGAGTGTCAACTTTTCCATTAGTTCAGTTGAAAATTATGGCTTTTGGACCATAGCCTATACTAATTATACAGATGTAATGGTGGATGTTAATGGCACTGGTATTACCAGATTACTCTATTGCGACTCACCCCTCAATAGAATTAAGTGCCAACAAATGAAGCATGAACTACCAGACGGTTTTTATTCTGCTAGCATGCTTGTTAAAAAGGATCTACCTAAGACATTTGTTACCATGCCACAGTTTTATAACTGGATGAACGTCACGTTACATGTTGTATTAAATGACACAGAGAAAGGGACAGACATCATTCTTGCCAAGGCAAATGAATTAGCCTCACTTGCTGACATACATTTTGAAATAGCTCAGGCCAACGGCAGTGTGACCAATGTTACTAGTCTATGTGTCCAAACAAGACAGTTGGCTCTATTCTATAAGTATACTAGCTTACAAGGTTTGTATACTTATTCTAATTTAGTAGAGCTACAAAATCATGACTGCCCTTTTTCACCACAACAGTTTAACAATTATCTGCAGTTTGAAACTTTGTGTTTTGATGTGAATCCAGCTGTTGCAGGTTGTAGGTGGTCGCTAGTCCATGACAACAAGTGGCGTACTCAATTCGCCACTATCACAGTTTCTTATAAAGACGGTGCTATGATCACGACTATGCCAAAGGCGCAGCTGGGTTTTCAAGACATTTCCAATATAGTAAAAGATGAATGCACTGATTATAACATATATGGATTTCAGGGCACAGGCATTATTAGAAATACGACCTCAAGATTAGTGGCTGGCCTTTATTATACATCTATTAGTGGTGACCTTCTAGCTTTTAAAAATAGTACTACTGGGGAGATCTTCACTGTAGTACCATGTGATTTGACAGCACAAGCAGCTGTGATTAATGATGAGATAGTTGGAGTTATAACAGCCATTAATCAAACTGATCTGTTTGAGTTTGTAAACCACACACAATCAAGAAGGTCACGTAGTTCAACATCTGAGACTGTAACAACCTATACTATGCCACAATTTTATTACATCACAAAGTGGAACAATGACACCTTGTCCAATTGCACAAGCGTCATTACTTATTCTTCCTTTGCCATTTGTAATACTGGTGAAATTAAATATGTTAATGTCACCAAAGTTGAAATTGTTGACGATAGTATAGGAGTTATCAAACCTGTTTCAACAGGCAACATATCTATACCTAAAAATTTCACTGTTGCAGTTCAGGCTGAATACATTCAGATTCAAGTTAAACCTGTTGTTGTGGATTGTGCTAAGTACGTCTGCAATGGTAATAGACATTGCCTTAGCTTGTTAACACAATACACTTCAGCTTGTCAGACAATTGAAAATGCCCTTAATTTAGGTGCACGACTTGAGTCTTTAATGCTTAATGACATGGTTACGGTGTCAGATCGTAGTTTAGAGCTTGCAACTGTTGAGAAATTTAACACCACAACTTTAGGTGGTGAAAAGTTGGGTGGTTTTTACTTTGACGGTCTGAGAGAATTGTTACCGCCTACAATCGGCAAGAGGTCAGCTGTTGAGGACTTACTGTTCAACAAAGTGGTAACTAGCGGTCTTGGCACTGTGGATGACGATTACAAAAAGTGTTCAGCTGGCACTGATGTTGCTGACTTAGTCTGTGCCCAATATTACAATGGCATAATGGTTTTACCTGGCGTTGTAGATCAAAACAAGATGGCCATGTATACTGCCTCATTAATAGGCGGTATGGCTTTGGGCTCTATTACATCTGCTGTGGCTGTTCCTTTTGCTATGCAAGTGCAGGCTAGACTTAACTACGTTGCATTACAAACTGATGTTCTACAGGAAAACCAGAAAATACTTGCTAATGCTTTTAATAATGCCATTGGTAATATTACACTAGCACTGGGAAAAGTCTACGATGCTATTACAACCATACCAGATGGTTTTAATAGTGTGGCTTCAGCATTGACTAAGATTCAGAGTGTAGTTAACCAACAGGGTGAAGCGTTGAGTCAACTTACTAGTCAGTTACAGAAGAATTTTCAGGCTATTAGCAGTTCTATTGCAGAAATTTACAATAGACTAGAAAAAGTGGAAGCTGATGCGCAAGTTGACCGCCTCATTACTGGTAGATTAGCAGCACTTAATGCTTATGTGTCTCAAACTTTAACTCAGTATGCTGAAGTCAAGGCTAGTAGGCAATTGGCAATGGAAAAAGTTAATGAGTGTGTGAAATCACAGTCGGATAGGTATGGTTTCTGTGGAAATGGAACCCACCTATTCTCACTGGCCAATTCTGCACCTGATGGTCTACTTTTCTTTCACACAGTTCTGCTTCCTACAGAATGGGAAGAAGTGACGGCATGGTCAGGAATATGTGTCAATGACACTTATGCATATGTGTTGAAAGATTTTGATCAGTCCATTTTCAGCTATAATGGTACGTATATGGTAACTCCTCGTAATATGTTTCAACCTAGAAAACCTCAGATGAGTGATTTCGTGCAGATCACGAGTTGTGAAGTGACTTTTTTGAACGCTACATATACAAAATTTCAGGATATTGTGATTGATTATATTGATATCAACAAGACTATCTCTGATATGCTTGACAAGTATAATTACACAACATCTGAATTGGATTTACAGCTGGAAATCTTTAATCAGACAAAGTTAAACCTTACTGCAGAAATAGACCAATTGGAACAAAGAGCAGACAACCTCACCACTATTGCACATGAACTACAGCAGTACATTGACAATCTTAATAAGACGCTTGTTGACCTCAAATGGCTCAACAGGATTGAAACTTATGTAAAATGGCCTTGGTATGTGTGGCTACTAATTGGACTAGTAATAGTATTCTGCATACCATTGTTACTGTTTTGCTGTCTCAGTACCGGATGCTGTGGCTGTTTTGGTTGTCTTGGCACTTGTTGCCACTCTCTTTGTAGTAGAAGACAATTTGAAAGTTACGAACCTATCGAAAAGGTTCACATTCATTAA
Protein
MILLILALVSTVTSEDAPHGVTLPQFNTSYNNAKFELNFYNFLQTWDIPPGTETILGGYLPYCGDGVNCGWYNFVFNTSVGSNAKYSYINTQNLNIPNVHGVYFDVREHNSDGIWDTRDRIGLLILVRGKSQYSLLMVLEDDVEANAPDVSVKICNWRHLHGNISEHHEWSASLGDGGQCVFNRRFSLDTTLTANDFYGFQWTDTYVDVYLSGTVTKVWIENDWDVVEASISYKWNKINYGYYIQFVNRTTYYAYNNTGGSNYTRLRLSECNSTYCAGYAKNVFVPIDGKIPESFSFSNWFLLSDKSTLVQGRVLSRQPVLVQCLRPVPTLSNNSAVASFNNDAFCPNVSADVLRFNLNFSDTDVYTASNNDEQLYFTFEDNTTASIACYSSANVTDFQPANNSASHIPFGKTMHSYFCFANFSHSVVSRQFLGILPPTVRELAFGRDGSIFVNGYKYFSLPPIKSVNFSISSVENYGFWTIAYTNYTDVMVDVNGTGITRLLYCDSPLNRIKCQQMKHELPDGFYSASMLVKKDLPKTFVTMPQFYNWMNVTLHVVLNDTEKGTDIILAKANELASLADIHFEIAQANGSVTNVTSLCVQTRQLALFYKYTSLQGLYTYSNLVELQNHDCPFSPQQFNNYLQFETLCFDVNPAVAGCRWSLVHDNKWRTQFATITVSYKDGAMITTMPKAQLGFQDISNIVKDECTDYNIYGFQGTGIIRNTTSRLVAGLYYTSISGDLLAFKNSTTGEIFTVVPCDLTAQAAVINDEIVGVITAINQTDLFEFVNHTQSRRSRSSTSETVTTYTMPQFYYITKWNNDTLSNCTSVITYSSFAICNTGEIKYVNVTKVEIVDDSIGVIKPVSTGNISIPKNFTVAVQAEYIQIQVKPVVVDCAKYVCNGNRHCLSLLTQYTSACQTIENALNLGARLESLMLNDMVTVSDRSLELATVEKFNTTTLGGEKLGGFYFDGLRELLPPTIGKRSAVEDLLFNKVVTSGLGTVDDDYKKCSAGTDVADLVCAQYYNGIMVLPGVVDQNKMAMYTASLIGGMALGSITSAVAVPFAMQVQARLNYVALQTDVLQENQKILANAFNNAIGNITLALGKVYDAITTIPDGFNSVASALTKIQSVVNQQGEALSQLTSQLQKNFQAISSSIAEIYNRLEKVEADAQVDRLITGRLAALNAYVSQTLTQYAEVKASRQLAMEKVNECVKSQSDRYGFCGNGTHLFSLANSAPDGLLFFHTVLLPTEWEEVTAWSGICVNDTYAYVLKDFDQSIFSYNGTYMVTPRNMFQPRKPQMSDFVQITSCEVTFLNATYTKFQDIVIDYIDINKTISDMLDKYNYTTSELDLQLEIFNQTKLNLTAEIDQLEQRADNLTTIAHELQQYIDNLNKTLVDLKWLNRIETYVKWPWYVWLLIGLVIVFCIPLLLFCCLSTGCCGCFGCLGTCCHSLCSRRQFESYEPIEKVHIH

Summary

Uniprot
D3XGI6  
Pubmed
20079778   
EMBL
GU338456    ADD49350.1   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002551   Corona_S1
IPR002552   Corona_S2
ProteinModelPortal
D3XGI6  
PDB
6JX7     E-value=0.0     Score=2526     Identity=88.24%     Cov(Q)=95.09%     Cov(P)=95.03%
3D Structure

Ontologies

GO
GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
1467
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
30.26611
Exp number, first 60 AAs:
0.00151
Total prob of N-in:
0.00009
outside
1  -  1408
TMhelix
1409  -  1431
inside
1432  -  1467
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号
In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Cancel Go
Change my password
Enter new password
Reenter new password
Cancel Go
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Cancel Regist
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.
OK