CoVDB Coronavirus Database (v3)   
Strain
Bat_KF569996 (Region: China;  Strain: Rhinolophus affinis coronavirus isolate LYRa11, complete genome.;  Date: 2011)
Gene
protein 7
Description
Annotated in NCBI,  protein 7
Location
KF569996(+):27093-27284
GenBank Accession
AHX37562.1
 

Sequence

CDS
ATGTTTCATCTAGTTGACTTCCAGGTTACAATAGCAGAGATATTGATTATCATTATGAGGACTTTCAAGATTGCCATTTGGAATCTTGATGTAATAATAAGTTCAATAGTGAGACAATTATTTAAGCCCCTAACTAAGAAGAATTATTCAGAGTTAGATGATGAAGAACCTATGGAGATTGAATATCCTTAA
Protein
MFHLVDFQVTIAEILIIIMRTFKIAIWNLDVIISSIVRQLFKPLTKKNYSELDDEEPMEIEYP

Summary

Uniprot
A0A2R3SUW5  
EMBL
MG772933    MG772934    AVP78035.1    AVP78046.1   
Pfam
PF12133   Sars6
Interpro
IPR022736   SARS_NS6
ProteinModelPortal
A0A2R3SUW5  

Ontologies

Subcellular Location

From MSLVP
Host nucleus. Host cytoplasm.

Topology

Length:
63
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
15.39583
Exp number, first 60 AAs:
15.39583
Total prob of N-in:
0.09182
POSSIBLE N-term signal
sequence
outside
1  -  14
TMhelix
15  -  37
inside
38  -  63
 
 
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