Strain
Dolphin_KF793826
(Region: Germany; Strain: Bottlenose dolphin coronavirus HKU22 isolate CF090331, complete genome.; Date: 2008-2010)
Gene
membrane protein
Description
Annotated in NCBI,
membrane protein
Location
GenBank Accession
Full name
Membrane protein
Alternative Name
E1 glycoprotein
Matrix glycoprotein
Membrane glycoprotein
Matrix glycoprotein
Membrane glycoprotein
Sequence
CDS
ATGGTGAATATGTATGAACTTGCACTTAGTGTGCTTAGGGATTACAATTTAGCACTATCCACATTTCTGACTTTGATTATTTGTGTGTTACAGTTTGGTTATGCCTCTCGTAACAGGTTCTTTTATTGGATTAAAATTATTACATTGTGGCTTATGTGGCCATTTGCTATTGTTACTGCAGTGTTTTCGTGTTTGTACCCCCCGTGTTATGAGTATGGTTGGGCAGAACAGCTTTTCCCTACTTCTTCACCAGTGAGTACAACCACACATAGTAGCACATTATCTGTTACTAAAGTTCCTATACCTCAGGGTAATGGTCTTTGGTCCTGTGGAACTTATGGTCATAATATTAACATTACTGCATTTGTGTTTGCGATAATTTTTGCAATTTTCACATGTGCAGCATGGTTATTTTATTGGATACAATCCACACGCCTGTATTTGAGAGTAAGGTCTTGGTGGGCTTTCTCACCCGACACTAACTACGTTGCTGTATTTAAAATGGCTAATGACCAGTATTTTACTTTGCCTTTGCTTGAAATACCTATGGTCCTCAGTCTTGTTTATAAGAACAATTTTGTTTATTGTAATGGTACATACCTCGGCCGAATTCCCAGTATGGGTTATCTGCCTGCTAGTTGTATAGTAGGCAGTGCCGAGAAGATTGCTAGATATAGGAAAATCACAGTGTCAGCAGCAGATGGCAGTGATGCTAATGTAGCTCGTTTTGGTACTGTGATATATGCGAAAGATAAATATATAAGTGCAGGACTTGCATATACTAAGAGAGAGAAAACTGAGACAGAGAAGCTTTATTCTGTTTAA
Protein
MVNMYELALSVLRDYNLALSTFLTLIICVLQFGYASRNRFFYWIKIITLWLMWPFAIVTAVFSCLYPPCYEYGWAEQLFPTSSPVSTTTHSSTLSVTKVPIPQGNGLWSCGTYGHNINITAFVFAIIFAIFTCAAWLFYWIQSTRLYLRVRSWWAFSPDTNYVAVFKMANDQYFTLPLLEIPMVLSLVYKNNFVYCNGTYLGRIPSMGYLPASCIVGSAEKIARYRKITVSAADGSDANVARFGTVIYAKDKYISAGLAYTKREKTETEKLYSV
Summary
Function
Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.
Subunit
Homomultimer. Interacts with envelope E protein in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Forms a complex with HE and S proteins. Interacts with nucleocapsid N protein. This interaction probably participates in RNA packaging into the virus.
Similarity
Belongs to the gammacoronaviruses M protein family.
Uniprot
EMBL
Pfam
PF01635
Corona_M
ProteinModelPortal
Ontologies
GO
Subcellular Location
From MSLVP
Host nucleus. Host cytoplasm.
Topology
Length:
274
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
68.9925699999999
Exp number, first 60 AAs:
39.32579
Total prob of N-in:
0.00829
POSSIBLE N-term signal
sequence
outside
1 - 14
TMhelix
15 - 34
inside
35 - 40
TMhelix
41 - 63
outside
64 - 118
TMhelix
119 - 141
inside
142 - 274
