Coronavirus Database

Strain

Avian_KJ128295 (Region: China; Strain: Infectious bronchitis virus isolate CK/CH/SD/121220, complete genome.; Date: 20-Dec-12)

Gene

6b protein

Description

Annotated in NCBI, 6b protein

Location

KJ128295(+):27168-27392

GenBank Accession

AHN49819.1

CDS

ATGGACTTGCTGCATTTGCTGTCACATTTTGTTAAATACTATTTTGTTGCTTTCCTATCAATTATTACAGGCATTGATTGTGATTATGTGCAATGTTTAAGCTACTTTTGGTTGCTTTTTGCTTGTTGTATTGTTGCTGTGCTTTTTATTATTGTGATTCTCATTAGTTTGCTTTATCGTAGAAGTGCAATAGTAAGAGTTAAGGAAGATAGGCATGTAGCTTGA

Protein

MDLLHLLSHFVKYYFVAFLSIITGIDCDYVQCLSYFWLLFACCIVAVLFIIVILISLLYRRSAIVRVKEDRHVA

Uniprot

X2J173 A0A0S2ZX82 A0A516UWI1 A0A346PYQ3 A0A221J5Q3 A0A1P8SFN1 + More
A0A516UWB2 A0A0N9QX53 A0A1L5YNA2 A0A1L5YNA6 G3C791 A0A221J5R3 G3C778 G3C7A4 A0A4Y5QAK6 G3C7F4 B3TD71 B3TD58 A0A0E3VZX0 A0A1X9Y2Y8 A0A0E3TI95 A0A385H6J9 A0A4Y5QS19 K7WJ36 A0A516UWI5 A0A516UWE6 A0A516UWK4 A0A516UWE0 A0A516UWI4 A0A516UWF2 A0A291B667 A0A240F541

Pubmed

26585962 30126059 30714035 28705717 27793730 26262637 + More
27938680 21994806 31439703 18514348 25712772 28495648 25843648 23166232 28917538

EMBL

KJ128295 AHN49819.1 KR822424 ALQ43525.1 MK581207 QDQ69196.1 + More
MG021194 MH878976 AXR85442.1 AYS76115.1 MF421319 ASM61970.1 KX272465 APY20704.1 MK581200 MK581201 QDQ69105.1 QDQ69118.1 KR231009 ALH21121.1 KU556806 KU556807 APP92752.1 APP92765.1 KU556805 APP92739.1 GU393332 ADV71737.1 MF421320 ASM61983.1 GU393331 ADV71724.1 GU393333 ADV71750.1 MK878536 QCX19629.1 GU393337 ADV71800.1 EU022526 ACB87503.1 EU022525 ACB87504.1 LN610099 CEK09118.1 KY805846 ARS23162.1 KP662631 AKC34141.1 MG197727 AXX83293.1 MK142676 QCX41905.1 JX840411 AFX59337.1 MK581205 QDQ69170.1 MK581203 QDQ69144.1 MK581208 QDQ69209.1 MK581202 QDQ69131.1 MK581206 QDQ69183.1 MK581204 QDQ69157.1 KY933089 KY933090 ATE90976.1 ATE90990.1 KX721498 APW81999.1

Proteomes

UP000154272 UP000138261 UP000097758 UP000160499 UP000138275 UP000146844 + More
UP000119508 UP000099410 UP000117980 UP000126934 UP000130326 UP000167873

ProteinModelPortal

X2J173 A0A0S2ZX82 A0A516UWI1 A0A346PYQ3 A0A221J5Q3 A0A1P8SFN1 + More
A0A516UWB2 A0A0N9QX53 A0A1L5YNA2 A0A1L5YNA6 G3C791 A0A221J5R3 G3C778 G3C7A4 A0A4Y5QAK6 G3C7F4 B3TD71 B3TD58 A0A0E3VZX0 A0A1X9Y2Y8 A0A0E3TI95 A0A385H6J9 A0A4Y5QS19 K7WJ36 A0A516UWI5 A0A516UWE6 A0A516UWK4 A0A516UWE0 A0A516UWI4 A0A516UWF2 A0A291B667 A0A240F541

GO

GO:0016021 C:integral component of membrane

From MSLVP

Host nucleus. Host cytoplasm.

Length:

74

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

41.49885

Exp number, first 60 AAs:

41.49679

Total prob of N-in:

0.87279

POSSIBLE N-term signal

sequence

inside

1 - 2

TMhelix

3 - 25

outside

26 - 34

TMhelix

35 - 57

inside

58 - 74

Sequence

Summary

Ontologies

Subcellular Location

Topology