CoVDB Coronavirus Database (v3)   
Strain
Feline_KP143511 (Region: United Kingdom;  Strain: Feline coronavirus isolate 80F, complete genome.;  Date: 1-Jan-13)
Gene
surface glycoprotein
Description
Annotated in NCBI,  surface glycoprotein
Location
KP143511(+):20164-24564
GenBank Accession
AJO27013.1
 

Sequence

CDS
ATGATACTATTGTTGGTACTTTTTAGTGTTGTAGGAGCTCACGATGCACCTCATGGTGTAACACTACCACAGTTTAACACCTCATACAACAATGACAAGTTTGAACTTAATTTCTACAATTTCTTGCAAACTTGGGATATACCACCAAACACAGAAACTATTCTGGGTGGTTACCTACCATACTGTGGGACAGGTGCTAACTGTGGTTGGTACAATTTTGTCTACCAACAAAATGTGGGATCAAATGGTAAATATTCTTATATAAACACACAAAATTTGAACATACCGAATGTTCATGGTGTTTATTTTGACGTACGTGAGCACAATTCAGATGGTGTGTGGGATCTACGCGACCGTGTAGGTTTACTCATAGCCATCCACGGCAAATCACAATATAGCCTACTCATGGTTTTGCAAGACAATGTGGAAGAGAATCAGCCTCACGTAGCTGTTAAAATCTGCCATTGGAAACCTGGCAACATAAGTTCAATTCATCAATTTAGTGTTAACCTAGGAGATGGTGGTCAATGTGTGTTCAATCAGAGATTCTCATTGGACACCATATTGACAACTAATGACTTCTATGGCTTCCAGTGGACTAATAATTATGTCAACATTTATCTAGGTGGCACCATTACTAAAGTGTGGGTTGAAAATGATTGGAGTGTTGTTGAATCCAGTATTTCCTACCACTGGAACCGAATCAACTATGGATATTATATGCAATTTGTCAACCGCACCACTTATTACGTTTATAATAATACTGGTGGTGCAAATTATACTCACCTGCAGCTCGAAGAGTGCCACTCTGAGTATTGCGCTGGTTATGCTAAGAATGTCTTTGTGCCTATTGATGGTAAAATACCAGATGGCTTCTCTTTTAGTAATTGGTTTTTACTATCAGACAAGTCCACATTGGTACAGGGTCGTGTTCTTAGTAAACAACCAGTTTTCGTACAATGTCTTAGAGCTGTGCCATCATGGTCCAACAACAGTGCCGTGGTGCATTTTAGTAATGATGATTTTTGTCCTAATGTTACGGCAGAGGTGTTAAGGTTTAATCTGAATTTTAGTGATACTGATGTTTATGTAGCTTCAAATAGTGATGATCAGTTGTACTTCACATTTGAAGACAATACTACTGCAGGCGTAGCTTGCTATAGTAGCGCTAATATTACAGATTATAAACCAAATACTAATGCTAGCTCACAGATCCCTTTTGGTAAAACCACGCATTCATACTTCTGTTTTGCCAATTTCTCAAGCTCTCATGTTACACAATTTTTGGGTATATTGCCACCAACTGTGCGAGAGTTTGCGTTTGGCAAAGACGGTTCCATTTTTGTTAATGGTTATAAATATTTTAGTTTTCCACCTATCAAGAGTGTTAATTTCTCTATTAGTTCGGTTGAAAATTTTGGTTTTTGGACTATAGCTTACACCAATTACACCGATGTAATGGTGGATGTTAATGGCACTGGTATTACTAGGTTGTTCTATTGTGACTCACCCATTAATAGAATTAAGTGCCAGCAACTGAAGTATGAACTACCAGATGGTTTTTATTCAGCTAGCATGCTTGTTAAAAAGGACTTACCTAAAACATTTGTAACTATGCCACAGTTTTATAATTGGATGAATGTCACTTTACATGTTGTGTTGAATGATACTGAGAAAAAGGCTGATATTATTCTGGCTAAGGCTTCTGAATTAGCCTCACTTGCAGACGTTCACTTTGAAATTGCACAAGCTAATGGCAGTGTGGTTAACGCCACCAGTCTGTGTGTACAGACAAGACAGTTGGCTCTCTTCTATAAGTATACTAGCTTACAAGGTTTGTATACTTATTCTAATTTGGTAGAACTGCAGAATTATGACTGCCCATTTTCGCCACATCAATTTAATAATTATTTGCAGTTTGAAACTTTGTGTTTTGATACAAGCCCGGCTGTTGCAGGTTGCAAGTGGTCTTTAGTTCATGATGTTAAATGGCGCACACAGTTTGCAACAATTACAATCTCTTATAAAGATGGTGCCAAGATTACAACTATGCCAAAAGCAAAGCTGGGTTTTCAAGATATCTCTAACATTGTAAAAGATGAATGCACTGATTATAACATTTACGGATTTCAGGGCACTGGTATCATCAGAAACACCACCACTAGGATGGTTGCAGGCCTTTACTACACCTCAATTAGTGGTGACTTGCTTGCATTTAAAAATAGCACTACAGGTGAAATTTTCACCGTAGTGCCATGTGGTTTAACGGCTCAAGCTGCAGTGATTAATGATGAAATAGTTGGAGTTATAACAGCTGTTAATCAAACTGATCTATTTGAGTTTGTAAATCATACACAAGCAAGAAGAGCACGCAGGTCAACAGGTTCACAGACCGTGCAAACTTATACTATGCCACAATTCTATTACATAACAAAGTGGAATAATGACAGCTCTACTAATTGTACATCTGTCATTACGTACTCCTCTTTTGCTATTTGTAACACGGGTGAGATTAAATATGTTAATGTCACTCATGTGGAAATTGTAGATGATAGTATAGGTGTGATCAAACCTATCTCAACAGGCAACATATCCATACCTAAAAATTTCACTGTCGCAGTTCAAGCTGAATACATTCAGATTCAAGTCAAACCCGTTGTGGTTGATTGCGCTAAGTATGTTTGTAATGGAAATAGTCATTGCCTCACACTACTTGCACAATACACATCTGCTTGTCAGACAATTGAAAATGCCCTTAATTTTGGTGCACGTCTTGAATCGCTAATGCTTAATGATATGATCACAGTATCAGATCGTAGTTTGGAGCTTGCAACTGTTGAAAAATTTAACACCACGGTTTTAGGTGCTGAAAAGTTGGGTGGTTTCTATTTTGATGGTTTGAGAGAGTTGTTACCACCTACAATTGGTAAGAGGTCTGCTATTGAGGATTTACTGTTTAATAAGGTGGTAACTAGTGGCCTTGGAACTGTTGATGATGATTATAAAAAGTGCTCTGCTGGTACAGACGTTGCAGACCTTGTGTGTGCTCAATATTATAATGGCATAATGGTACTACCTGGTGTTGTGGACCAAAATAAGATGTCTATGTACACCGCTTCCTTAATAGGTGGCATGGCCATGGGTTCTATCACATCAGCAGTAGCCGTCCCCTTTGCTATGCAAGTGCAGGCCAGGCTTAATTATGTTGCATTACAAACGGATGTCTTACAGGAAAACCAGAAAATACTTGCTAATGCCTTTAATAATGCCATCGGCAACATCACGCTAGCACTGGGAAAAGTTTCTAATGCCATTACTACTATTTCAGATGGATTTAATACAATGGCTTCAGCACTTACTAAGATTCAGAGTGTGGTTAATCATCAGGGTGACGCATTGAGTCAACTTACTAGTCAGTTACAGAAGAATTTCCAGGCTATTAGTAGTTCTATTGCTGAAATCTACAATAGACTAGAAAAGGTTGAGGCTGATGCTCAAGTTGACCGCCTCATTACTGGGCGATTGGCAGCACTTAATGCCTATGTGTCTCAAACTTTAACTCAATACTCAGAAGTCAAGGCTAGTAGGCAATTAGCAATGGAGAAGGTTAATGAGTGTGTTAAATCACAGTCTAATAGGTATGGGTTCTGTGGAAATGGAACACACCTATTCTCTCTAGTCAATTCTGCACCTGATGGTTTACTCTTCTTTCACACAGTTTTGCTTCCTACAGAATGGGAAGTAGTGACGGCATGGTCAGGAATATGTGTTAATGACACGTATGCATATGTGTTGAAAGACTTTGAATATTCTATTTTCAGCTATAACGGTACGTATATGGTGACTCCTCGTAATATGTTTCAACCTAGAAAACCTCAGATGAGTGATTTCGTGCAAATTACGAGTTGTGAAGTGACTTTTCTGAACACTACATATACGACATTTCAGGAGATTGTGATTGATTATATTGATATCAACAAGACTATCGCTGATATGCTTGAACAATATAATCCCAATTACACAACACCTGAATTAAACTTACAGCTTGAAATCTTTAATCAGACAAAGTTAAACCTTACTGCAGAAATAGACCAATTAGAGCAAAGAGCAGACAACCTTACTAACATAGCACATGAGCTACAACAGTACATTGACAATCTTAATAAGACCCTTGTTGACCTCGAATGGCTCAACAGAGTAGAGACTTATGTAAAATGGCCCTGGTATGTGTGGCTACTAATTGGATTAGTAGTGGTCTTCTGCATACCATTGTTACTGTTTTGCTGTCTGAGTACTGGTTGTTGTGGATGCTTTGGTTGTCTTGGCAGTTGTTGTCATTCTCTTTGCAGCAGACGACAATTTGAAAGTTATGAACCCATTGAAAAGGTTCACATTCATTAA
Protein
MILLLVLFSVVGAHDAPHGVTLPQFNTSYNNDKFELNFYNFLQTWDIPPNTETILGGYLPYCGTGANCGWYNFVYQQNVGSNGKYSYINTQNLNIPNVHGVYFDVREHNSDGVWDLRDRVGLLIAIHGKSQYSLLMVLQDNVEENQPHVAVKICHWKPGNISSIHQFSVNLGDGGQCVFNQRFSLDTILTTNDFYGFQWTNNYVNIYLGGTITKVWVENDWSVVESSISYHWNRINYGYYMQFVNRTTYYVYNNTGGANYTHLQLEECHSEYCAGYAKNVFVPIDGKIPDGFSFSNWFLLSDKSTLVQGRVLSKQPVFVQCLRAVPSWSNNSAVVHFSNDDFCPNVTAEVLRFNLNFSDTDVYVASNSDDQLYFTFEDNTTAGVACYSSANITDYKPNTNASSQIPFGKTTHSYFCFANFSSSHVTQFLGILPPTVREFAFGKDGSIFVNGYKYFSFPPIKSVNFSISSVENFGFWTIAYTNYTDVMVDVNGTGITRLFYCDSPINRIKCQQLKYELPDGFYSASMLVKKDLPKTFVTMPQFYNWMNVTLHVVLNDTEKKADIILAKASELASLADVHFEIAQANGSVVNATSLCVQTRQLALFYKYTSLQGLYTYSNLVELQNYDCPFSPHQFNNYLQFETLCFDTSPAVAGCKWSLVHDVKWRTQFATITISYKDGAKITTMPKAKLGFQDISNIVKDECTDYNIYGFQGTGIIRNTTTRMVAGLYYTSISGDLLAFKNSTTGEIFTVVPCGLTAQAAVINDEIVGVITAVNQTDLFEFVNHTQARRARRSTGSQTVQTYTMPQFYYITKWNNDSSTNCTSVITYSSFAICNTGEIKYVNVTHVEIVDDSIGVIKPISTGNISIPKNFTVAVQAEYIQIQVKPVVVDCAKYVCNGNSHCLTLLAQYTSACQTIENALNFGARLESLMLNDMITVSDRSLELATVEKFNTTVLGAEKLGGFYFDGLRELLPPTIGKRSAIEDLLFNKVVTSGLGTVDDDYKKCSAGTDVADLVCAQYYNGIMVLPGVVDQNKMSMYTASLIGGMAMGSITSAVAVPFAMQVQARLNYVALQTDVLQENQKILANAFNNAIGNITLALGKVSNAITTISDGFNTMASALTKIQSVVNHQGDALSQLTSQLQKNFQAISSSIAEIYNRLEKVEADAQVDRLITGRLAALNAYVSQTLTQYSEVKASRQLAMEKVNECVKSQSNRYGFCGNGTHLFSLVNSAPDGLLFFHTVLLPTEWEVVTAWSGICVNDTYAYVLKDFEYSIFSYNGTYMVTPRNMFQPRKPQMSDFVQITSCEVTFLNTTYTTFQEIVIDYIDINKTIADMLEQYNPNYTTPELNLQLEIFNQTKLNLTAEIDQLEQRADNLTNIAHELQQYIDNLNKTLVDLEWLNRVETYVKWPWYVWLLIGLVVVFCIPLLLFCCLSTGCCGCFGCLGSCCHSLCSRRQFESYEPIEKVHIH

Summary

Uniprot
D3XGI6  
Pubmed
20079778   
EMBL
GU338456    ADD49350.1   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002551   Corona_S1
IPR002552   Corona_S2
ProteinModelPortal
D3XGI6  
PDB
6JX7     E-value=0.0     Score=2576     Identity=88.45%     Cov(Q)=95.09%     Cov(P)=94.96%
3D Structure

Ontologies

GO
GO:0019064  P:fusion of virus membrane with host plasma membrane
 GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
1466
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
29.10368
Exp number, first 60 AAs:
0.01791
Total prob of N-in:
0.00093
outside
1  -  1407
TMhelix
1408  -  1430
inside
1431  -  1466
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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