Strain
Feline_KP143512
(Region: United Kingdom; Strain: Feline coronavirus isolate 26M, complete genome.; Date: 1-Jan-13)
Gene
truncated accessory protein 3c
Description
Annotated in NCBI,
truncated accessory protein 3c
Location
GenBank Accession
Sequence
CDS
ATGATTGGCGGACTGTTTCTTAACACTCTAAGTTTTATAGTTACTACTCAACATGTGGTTGTTAATAACACACCACATTTTAATACTGTAGTGCAACAACATCATGTTGTTAGTGCTAATGTTAAAAGTTTTCATCTAGAGTTCAGCATAGCTGTTCTCTTTGTTTTATTTCTAGCTTTGTACCGTAGTACAAACTTTAAAGCGTGTGTCGGTATCTTAATGTTTAAGATAGTATCAATGACACTTATAGGACCTATGCTTATAGCATTTGGTCACTATATAGATGGCATTGTGACAACAACTGTCTTAGCTTTAAGATTCATTTACTTAGCATACTTTTGGTATGTTAATAGTAAATTTGAATTTATTTTATATAACACAACGACACTAATGTTTGTACATGACAGAGCTGCACCGTTTATGAGAAGTTCTCACGGCTCTATTTATGTCACATTGTATGGAGGCATAAATTATATGTTCGTGAATGATCTTACGTTGCATTTTGTAGACCCTATGCTTGTAGGCATAGCTATACGTGGCCTAGTTCGTGCTGACCTAACAGTTGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATCTATATATTTTCACAGGAGGCCGTCGTAATGCAGCCTTTTCTCAGGCGGTTATAA
Protein
MIGGLFLNTLSFIVTTQHVVVNNTPHFNTVVQQHHVVSANVKSFHLEFSIAVLFVLFLALYRSTNFKACVGILMFKIVSMTLIGPMLIAFGHYIDGIVTTTVLALRFIYLAYFWYVNSKFEFILYNTTTLMFVHDRAAPFMRSSHGSIYVTLYGGINYMFVNDLTLHFVDPMLVGIAIRGLVRADLTVVRAVELLNGDFIYIFSQEAVVMQPFLRRL
Summary
Uniprot
EMBL
Proteomes
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
217
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
89.72313
Exp number, first 60 AAs:
26.20973
Total prob of N-in:
0.44151
POSSIBLE N-term signal
sequence
outside
1 - 43
TMhelix
44 - 61
inside
62 - 67
TMhelix
68 - 90
outside
91 - 93
TMhelix
94 - 116
inside
117 - 217
