CoVDB Coronavirus Database (v3)   
Strain
Avian_KR822424 (Region: France;  Strain: European turkey coronavirus 080385d, complete genome.;  Date: 2008)
Gene
4c
Description
Annotated in NCBI,  4c
Location
KR822424(+):25464-25634
GenBank Accession
ALQ43521.1
 

Sequence

CDS
ATGGAAAAGTCTACTACGAAGACACACCAGTTTTCCAAAGAGGTTGTTGTAGGTTGTGGTCCCATTATAAGAGGGATTAAATGGATTAAACCACCTACACTACTTACTTGTATTAAGGGCGTTTGGACTTACAAGCGCTTAACAAATACAGACGATGAAATGGCTGACTAG
Protein
MEKSTTKTHQFSKEVVVGCGPIIRGIKWIKPPTLLTCIKGVWTYKRLTNTDDEMAD

Summary

Uniprot
A0A0S2ZX52   G3C7C5   A0A516UWI6   A0A4Y5QA01   A0A516UWB3   A0A1X9Y2X3   + More
G3C787   G3C7A0   J7HGV3   A0A1X9Y2W6   A0A0D3MEG6   I3RUA0   A0A516UWF5   A0A516UWL7   G3C774   A0A1P8SFM2   A0A221J5S4   A0A516UWC1   A0A0E3XHI6   A0A221J5R1   A0A240F543   A0A4Y5QRZ9   A0A516UWE8   A0A3G4BBV1   G3C7G3   K7WC31   G3C7F0   A0A0N9R023   A0A346PYP9   A0A516UWG0   A0A516UWH8   B3TD54  
Pubmed
26585962    21994806    31439703    28495648    22903901    21049275    + More
25721384    27938680    22542436    27793730    28705717    25843648    30714035    23166232    25636916    26262637    30126059    18514348   
EMBL
KR822424    ALQ43521.1    GU393335    ADV71779.1    MK581206    QDQ69179.1    + More
MK878536    QCX19625.1    MK581200    MK581201    QDQ69101.1    QDQ69114.1    KY805846    ARS23158.1    GU393332    ADV71741.1    GU393333    ADV71754.1    JX143760    AFQ00049.1    KY805845    ARS23145.1    KF460437    KU556807    AIG54289.1    APP92761.1    JN983807    KF931628    AFK30958.1    AIG54300.1    MK581203    QDQ69140.1    MK581208    QDQ69205.1    GU393331    ADV71728.1    KX272465    APY20700.1    MF421319    ASM61966.1    MK581202    QDQ69127.1    KP662631    AKC34138.1    MF421320    ASM61979.1    KX721498    APW82002.1    MK142676    QCX41901.1    MK581205    QDQ69166.1    MH878976    AYS76111.1    GU393334    GU393338    ADV71816.1    JX840411    MF508703    MG197727    AFX59333.1    AWR92751.1    AXX83289.1    GU393336    GU393337    ADV71804.1    KR231009    ALH21117.1    MG021194    AXR85438.1    MK581204    QDQ69153.1    MK581207    QDQ69192.1    EU022525    ABW75130.1   
Proteomes
UP000138261    UP000136241    UP000160499    UP000146844    UP000123393    UP000128029    + More
UP000138275    UP000130326    UP000129978    UP000131863    UP000167873    UP000119508    UP000160333    UP000097758    UP000117980   
ProteinModelPortal
A0A0S2ZX52   G3C7C5   A0A516UWI6   A0A4Y5QA01   A0A516UWB3   A0A1X9Y2X3   + More
G3C787   G3C7A0   J7HGV3   A0A1X9Y2W6   A0A0D3MEG6   I3RUA0   A0A516UWF5   A0A516UWL7   G3C774   A0A1P8SFM2   A0A221J5S4   A0A516UWC1   A0A0E3XHI6   A0A221J5R1   A0A240F543   A0A4Y5QRZ9   A0A516UWE8   A0A3G4BBV1   G3C7G3   K7WC31   G3C7F0   A0A0N9R023   A0A346PYP9   A0A516UWG0   A0A516UWH8   B3TD54  

Ontologies

Subcellular Location

From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:
56
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.03421
Exp number, first 60 AAs:
0.03421
Total prob of N-in:
0.79155
inside
1  -  56
 
 
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