Strain

Porcine_KT021231 (Region: China; Strain: Porcine epidemic diarrhea virus strain YN90, complete genome.; Date: 10-May-14)

Gene

hypothetical protein

Description

Annotated in NCBI, hypothetical protein

Location

KT021231(+):24785-25219

GenBank Accession

ALM09383.1

Sequence

CDS

ATGTTTCTTGGACTTTTTCAATACACGATTGACACAGTCGTCAAAGATGTCTCTAAGTCTGCCAACTTGTCTTCGGATGCTGTCCAAGAGTTGGAGCTTAATGTAGTTCCAATTAGACAAGCTTCAAATGTGACTGGTTTTCTTTTCACCAGTGTTTTTATTTACTTCTTTGCACTGTTTAAAGCGTCTTCTTTGAGGCGCAATTATGTTATGTTGGCAGCGCGTTTTGCTGTCATCTTTCTTTATTGCCCACTTTTATATTACTGTGGTGCATTTTTAGATGCAACTATTATCTGTTGCACACTTATTGGCAGGCTCTTTTTAGTCTGCTTTTATTCCTGGCGCTATAAAAATGCGCTCTTTATTATCTTTAATACTACTACACTTTCTTTTCTCAATGGTAAAGCAGCTTTTATGACGGCAAATCCATTGTGA

Protein

MFLGLFQYTIDTVVKDVSKSANLSSDAVQELELNVVPIRQASNVTGFLFTSVFIYFFALFKASSLRRNYVMLAARFAVIFLYCPLLYYCGAFLDATIICCTLIGRLFLVCFYSWRYKNALFIIFNTTTLSFLNGKAAFMTANPL

Summary

Uniprot

A7UG22

Pubmed

17932736 21210162 22532530 23151819

EMBL

EU054929 HQ537439 HQ537441 HQ537448 HQ537455 JN825712 + More
JQ023161 JQ664298 KC294277 MK032691 ABS89138.1 ADQ27455.1 ADQ27457.1 ADQ27464.1 ADQ27471.1 AFC98508.1 AFE85963.1 AFK09781.1 AFZ85197.1 QBO24664.1

Proteomes

UP000122353 UP000133157

Pfam

PF03053 Corona_NS3b

Interpro

IPR004293 Coronavirus_Orf3b

ProteinModelPortal

A7UG22

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Multi-Pass Membrane

Topology

Length:

144

Number of predicted TMHs:

Exp number of AAs in TMHs:

78.89175

Exp number, first 60 AAs:

19.41173

Total prob of N-in:

0.03805

POSSIBLE N-term signal

sequence

outside

1 - 37

TMhelix

38 - 60

inside

61 - 68

TMhelix

69 - 88

outside

89 - 91

TMhelix

92 - 114

inside

115 - 118

TMhelix

119 - 141

outside

142 - 144