Strain

Porcine_KU893869 (Region: USA; Strain: Porcine epidemic diarrhea virus strain PC22A-P95-13, complete genome.; Date: 1-Jun-15)

Gene

orf3 protein

Description

Annotated in NCBI, orf3 protein

Location

KU893869(+):24772-25446

GenBank Accession

APX42114.1

Sequence

CDS

ATGTTTCTTGGACTTTTTCAATACACGATTGACACAGTTGTCAAAGATGTCTCAAAGTCTGCTAACTTGTCTTTGGATGCTGTCCAAGAGTTGGAGCTCAATGTAGTTCCAATTAGACAAGCTTCAAATGTGACGGGTTTTCTTTTCACCAGTGTTTTTATCTACTTCTTTGCACTGTTTAAAGCGTCTTCTTTGAGGCGCAATTATATTATGTTGGCAGCGCGTTTTGCTGTCATTGTTCTTTATTGCCCACTTTTATATTATTGTGGTGCATTTTTAGATGCAACTATTACTTGTTGCACACTTATTGGCAGGCTTTGTTTAGTCTGCTTTTACTCCTGGCGCTATAAAAATGCGCTCTTTATTATTTTTAATACTACGACACTTTCTTTCCTCAATGGTAAAGCAGCTTATTATGACGGCAAATCCATTGTGATTTTAGAAGGTGGTGACCATTACATCACTTTTGGCAACTCTTTTGTTGCTTTTGTTAGTAGCATCGACTTGTGTCTAGCTATACGTGGGCGGCAAGAAGCTGACCTACAGCTGTTGCGAACTGTTGAGCTTCTTGATGGCAAGAAGCTTTATGTCTTTTCGCAACATCAAATTGTTGGCATTACTAATGCTGCATTTGACTCAATTCAACTAGACGAGTATGCTACAATTAGTGAATGA

Protein

MFLGLFQYTIDTVVKDVSKSANLSLDAVQELELNVVPIRQASNVTGFLFTSVFIYFFALFKASSLRRNYIMLAARFAVIVLYCPLLYYCGAFLDATITCCTLIGRLCLVCFYSWRYKNALFIIFNTTTLSFLNGKAAYYDGKSIVILEGGDHYITFGNSFVAFVSSIDLCLAIRGRQEADLQLLRTVELLDGKKLYVFSQHQIVGITNAAFDSIQLDEYATISE

Summary

Uniprot

A7UG22

Pubmed

17932736 21210162 22532530 23151819

EMBL

EU054929 HQ537439 HQ537441 HQ537448 HQ537455 JN825712 + More
JQ023161 JQ664298 KC294277 MK032691 ABS89138.1 ADQ27455.1 ADQ27457.1 ADQ27464.1 ADQ27471.1 AFC98508.1 AFE85963.1 AFK09781.1 AFZ85197.1 QBO24664.1

Proteomes

UP000122353 UP000133157

Pfam

PF03053 Corona_NS3b

Interpro

IPR004293 Coronavirus_Orf3b

ProteinModelPortal

A7UG22

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Multi-Pass Membrane

Topology

Length:

224

Number of predicted TMHs:

Exp number of AAs in TMHs:

80.64102

Exp number, first 60 AAs:

19.29435

Total prob of N-in:

0.08774

POSSIBLE N-term signal

sequence

outside

1 - 40

TMhelix

41 - 63

inside

64 - 75

TMhelix

76 - 98

outside

99 - 224