Strain
Human_TGEV_KX900404
(Region: USA: Oklahoma; Strain: Transmissible gastroenteritis virus strain TGEV/USA/Oklahoma147/2012, complete genome.; Date: 29-Nov-12)
Gene
non-structural protein 3b
Description
Annotated in NCBI,
non-structural protein 3b
Location
GenBank Accession
Sequence
CDS
ATGATTGGTGGACTTTTTCTTAATACTCTGAGTTTTGTAATTGTTAGTAACCATTCTATTGTCAATAACACAGCAAATGTGCATCATACACAACAAGACCATGTTATAGTACAACAGCATCATGTTGTTAGTGCTAGAACACAAAATTATTACCCAGAGTTCAGCATCGCTGTACTTTTTGTATCTTTCCTAGCTTTGTACCGTAGTACAAACTTTAAGACGTGTGTCGGTATCTTAATGTTTAAGATTTTATCAATGACACTTTTAGGACCTATGCTTATAGTATATGGTTACTACATTGATGGCATTGTTACAACAACTGTCTTATCTTTAAGACTTGCCTACTTAGCATACTTTTGGTATGTTAATAGTAGGTTCGAATTTATTTTATACAACACAACGACACTCATGTTTGTACATGGCAGAGCTGCACCGTTTAAGAGAAGTTCTCACAGCTCTATTTATGTCACATTATATGGTGGCATAAATTATATGTTTGTGAATGACCTCACGTTGCATTTTGTAGACCCTATGCTTGTAAGCATAGCAATACGTGGCTTAAATCATGCTGATCTAACTGTAGTTAGAGCAGTTGAACTTCTCAATGGTGATTTTATTTATATATTTTCACAGGAGCCCGTAGTCGGTGTTTACAATGCAGCCTTTTCTCAGGCGGTTCTAAACGAAATTGACTTAAAAGAAGAAAAGGGAGACCGTACCTATGACGTTTCCTAG
Protein
MIGGLFLNTLSFVIVSNHSIVNNTANVHHTQQDHVIVQQHHVVSARTQNYYPEFSIAVLFVSFLALYRSTNFKTCVGILMFKILSMTLLGPMLIVYGYYIDGIVTTTVLSLRLAYLAYFWYVNSRFEFILYNTTTLMFVHGRAAPFKRSSHSSIYVTLYGGINYMFVNDLTLHFVDPMLVSIAIRGLNHADLTVVRAVELLNGDFIYIFSQEPVVGVYNAAFSQAVLNEIDLKEEKGDRTYDVS
Summary
Uniprot
EMBL
Proteomes
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Single-Pass Membrane
Topology
Length:
244
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
78.55171
Exp number, first 60 AAs:
13.75287
Total prob of N-in:
0.20560
POSSIBLE N-term signal
sequence
outside
1 - 49
TMhelix
50 - 67
inside
68 - 73
TMhelix
74 - 96
outside
97 - 99
TMhelix
100 - 122
inside
123 - 244
